Loigolactobacillus coryniformis subsp. torquens: LC20004_03945
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Entry
LC20004_03945 CDS
T05341
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcy03400
]
LC20004_03945
Enzymes [BR:
lcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC20004_03945
DNA repair and recombination proteins [BR:
lcy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LC20004_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
AAA_12
ResIII
Herpes_ori_bp
AAA_22
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ATO43103
UniProt:
A0A2D1KLT8
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All DBs
Position
818812..822537
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AA seq
1241 aa
AA seq
DB search
MSAKTNFTASQQHAVTDAGRNILVSASAGSGKTTVLVERVIQKILHGTNVDELLVVTFTE
AAASEMRDRIQTALQKALAASEEPKQRQHLSQQLSRLAVAHISTLHAFCLQLIERYYYVI
DLDPVFRLLTDDTEVILLREDVWSDLRETLYGDSPAFAQLTANFSNDRSDDGLTDLVMRL
YDFANANPEPTKWLAQLAAAYHITVAEPTASTFYQQQLLPLLQEELTQASQDLSSAQAIA
AEQQLDKLVACLIADQQQVAALQAQLTSATWDELRQQFLTFKLKRAPSLRNLDDEAKVAK
TTATDFRKQAKQRVSAIGDAYFGLSADRLIEVMGQTEQLVTQLVAVVEQFGQAFRAEKQR
RHLLDFSDLEHFTLAILTADNASGVQTRTALQRQFSEVLVDEYQDTNRLQETILTTVAQS
DPGNMFMVGDVKQSIYAFRLADPSLFLDKYHQFAQADSADQRIILAENFRSVANIDDFTN
LIFSQLMDQTVGEMAYDDSAKLVAGAKYPADLPATTELLVYEADTATAEDGIPEQFALDD
KAQGQVALVAQRIKQLVDHGQVYDRKNEQLRPIRYQDIVLLTPTRKNNLIIVDWFKRLGI
PVVVNGAQSYFQTTEIQIMMALLSVIDNPYQDIPLVSVLRSPIVGLNENELAFLRINRRT
GDYYQAVLDFQQNFVPMGAPEFQQQLYAKIDRFLGQLDQFRELARQNQLVTLIWTIYNET
GFLDYVGGMPAGAQRQANLHALYERAHAYEASSFKGLFQFVRFIKQMQEKDKDLGEAPAQ
TVEDAVSVMTIHGSKGLEFPVVFLMDATHQFNQDNLRGQYILDDRFGIGVTYLDPDKRIE
INLPQKQIAYTLARRRQAAEEMRLLYVALTRAEQQLFIVGSYPNREKALANWQKAFQSQH
LVLNAGLRSGINNFMDWLGMCLVRHPQFDQSLLTQVNSFSGLAQDQTQFKVHFYTANDVL
PAEMTTEIDQTNWPDKFAAAARTTDFTSLNVDQLDQVLNLRYPFQAATQTTAYQAVSEVK
RLFDDPTNSEMNPLLVDAGEKAPGVHRYVAQDFAVPQFMQTTTQVPPTAVGTATHLVLQE
VDLHTAPTAASIAQLIKELVAQNIIAAPVAKQIKPAHILRFFASDLGQQLLAQPDNVVRE
APFSLLLPATQLFTDFAPDDPAQILIHGIMDGYLVTSDQVILFDYKTDYVPQTNAAPKIN
QLKQRYAGQLNLYAAALARILQRPVTHKYLYLLASGDSLAV
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcaaaaacaaactttactgcaagtcagcaacacgcagttacagatgctggacgt
aatatcctagtttctgcttcagccggttcggggaagacaactgtgctggttgaacgcgtg
attcaaaaaattttacatggcaccaatgttgatgagcttttagtcgtgacttttactgaa
gcggccgccagtgaaatgcgagaccgcatccaaacggctttgcaaaaggcattagctgct
agtgaagagcctaagcaacggcagcatttaagtcagcagcttagtcggttagcggtggca
cacatcagtacattgcacgctttttgtttgcaattgatcgaacgttactattatgtgatt
gatctagacccggtttttcgtttattgactgatgacacggaagtcattttattgcgggaa
gatgtctggtcagatctgcgggagactttgtatggtgatagcccggcttttgcgcaattg
accgctaatttttccaacgatcgtagcgatgatgggctgactgatttagtgatgcgatta
tatgattttgctaacgccaatccggagccgacaaagtggttggcgcaactggctgccgct
tatcacattacggtagcggaaccaacggctagtacgttctatcagcaacagttgttacca
ctgttgcaggaagagttgacgcaggcaagccaggatcttagtagtgcgcaagcaattgca
gcagagcaacaattggataagttggttgcctgtttaatagcggatcagcaacaagtagcc
gctttgcaagcacaattgactagcgcaacctgggatgaattgcggcagcagtttttgact
tttaaactaaaacgggcaccttcactgcgtaatttggacgatgaggctaaagtagctaaa
acgacggcaacagattttcggaaacaagcaaagcaacgcgtgagtgccattggtgatgct
tactttggattatcggctgatcgattgatcgaggtgatggggcaaacagaacaattagtg
actcagttggtggccgtagtggaacaatttggtcaagcctttcgtgccgaaaaacaacgg
cggcatttattggactttagtgatttagaacattttaccttggcaatcttaactgcggat
aacgccagtggggtgcaaacccgaactgcgttgcagcggcaatttagcgaagtcttagtc
gatgagtatcaagataccaatcgcttgcaggagacgattttgactaccgtggcacaatct
gatcctggcaatatgtttatggtcggggatgttaaacagtcgatctatgcctttcgcttg
gccgatcctagtttgttcttggataaataccatcagtttgcccaagctgatagtgccgat
caacggatcattttggcggaaaatttccgctcggtggcgaacattgatgattttaccaac
ttaattttcagtcagttaatggatcaaactgtgggtgaaatggcctatgatgacagtgcc
aagttagtggccggtgctaaatatccggctgacttgccggcgacaactgaattattggtg
tacgaggccgataccgctaccgcagaggatggtatcccagagcaatttgcattggatgat
aaggctcagggacaggtagcactggtggcgcaacgaatcaagcagttggtggatcacggt
caagtttatgaccgtaaaaatgagcaactgcgaccaattcggtatcaagatattgtttta
ctaacaccaacgcgcaagaataatttgatcattgttgattggtttaagcggttaggtatt
ccagttgtcgttaatggggcacaaagttattttcagaccactgaaattcaaattatgatg
gcgttattaagtgtcatcgataatccttatcaagatattcctttggttagtgtgttacgc
tcaccaatcgttgggcttaacgaaaacgaactagcattcttacgaattaatcgccgcact
ggtgattattatcaagcggtacttgatttccaacaaaattttgtgccaatgggtgcgcca
gaattccaacagcaattgtatgctaaaatcgaccgttttctaggccagcttgaccaattc
cgggaattagcacggcagaatcaattggttactttgatttggacgatttataatgaaacc
ggctttctagactatgtaggtgggatgccagctggtgcgcaacggcaggctaatttacat
gcgctgtacgaacgtgcacatgcgtatgaagccagcagtttcaaaggcttgtttcaattt
gtgcggtttatcaagcaaatgcaggaaaaagataaagatctaggtgaagcaccagcacaa
acagttgaagatgccgtttccgttatgacaatccatggtagtaaagggctggaatttcca
gtggtctttttgatggatgctacgcaccagttcaaccaagataatttacgtggtcagtat
atcttggatgatcgttttggaattggcgttacttatttagatccagataaacggatcgag
atcaacttaccgcaaaaacagattgcttatacgctagcacggcggcggcaagcggctgaa
gaaatgcgtttattatatgttgctttgactcgagcagagcagcaattatttatcgtcggt
agttatccgaatcgagaaaaggcattggccaattggcagaaagcttttcagagtcagcat
ttagtgctaaatgctgggctacgcagcggtatcaacaattttatggattggttgggtatg
tgtctagttcgccatccacaatttgatcaaagcttattaacccaagtaaattcatttagc
ggtttagcacaggaccaaactcaatttaaagttcatttctatacagctaatgacgtttta
ccagcagaaatgactactgaaattgatcaaactaattggccggataaatttgcggcagca
gcgcgtacgactgattttaccagtttaaatgttgatcagttagatcaagtattgaatctg
cgttatccatttcaagcggcgacgcaaacaacggcttatcaagcagtttcagaagtgaaa
cgtttatttgatgatccaacgaatagtgaaatgaatcccttgcttgttgacgctggtgaa
aaagcaccgggcgttcatcgctatgtagcccaggactttgcagtaccacaatttatgcag
acgaccacacaggtaccgccgactgcagtcgggacggcgacgcatcttgttttacaagaa
gttgatttgcatacagcaccaactgcggctagtattgctcagttgatcaaggagcttgtg
gctcaaaatattattgcggcaccagtggccaagcaaattaaaccagctcatattctgcgt
ttctttgccagtgatctgggacagcagttgttggcacagccggataatgtggttcgcgaa
gcaccattttcgttgttattaccggcgactcaattgtttactgattttgctcccgacgat
cccgcacagattctgattcatgggatcatggacggttatttagtgacctctgatcaggtg
atcttatttgattacaaaacggattatgtcccacaaaccaacgctgcacctaaaattaat
cagttgaagcagcgttatgcagggcaattgaacctatatgcggcagcattggcccgtatt
ctacaacgtccggtaacgcacaaatacctttatctactggctagtggcgattcattggcc
gtttga
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