Loigolactobacillus coryniformis subsp. torquens: LC20004_06615
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Entry
LC20004_06615 CDS
T05341
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC20004_06615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcy03019
]
LC20004_06615
Messenger RNA biogenesis [BR:
lcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LC20004_06615
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
SIS_2
Lactamase_B_6
RPOC_hybrid
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
ATO43600
UniProt:
A0A2D1KN75
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Position
complement(1351596..1353278)
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AA seq
560 aa
AA seq
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MKKLNVKNNETAVFAMGGLGEIGKNMYGIQFQDEIILIDCGIKFPEDELLGIDYVIPDYA
YAMTNLSKIKALVITHGHEDHIGGIPFLLQQMNVPIYAGPLALALIRGKLEERGLLKDAE
LHEINEDTVLKFRKTSVSFFRTTHSIPDTLGVAVKTPQGTIVETGDYKFDLTPVGDQPAP
NFQKMARLGEEGVLCLMSDSTNAEVPSFTKSERFVEQSLKHIIDKIEGRIIFATFASNIS
RIKEASDAALAAGRKIAVFGRSMQNAIVNGTELGYLNIPEESLVEGNELNHLPANKIMIL
CTGSQGEPMAALSRIANGTHRQISIQPGDTVVFSSNPIPGNTTSVNHVINELSEAGAEVI
HGKVNNVHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMLQLHTELAEQTHVPEENTFIM
ENGDVLALTSDSARIAGHFTAGDVYVDGSGIGDIGNVVLHDRQVLSEEGIVIVVATINLK
TKQVLAGPDILSRGFVYMRESGELISKGQKRIYRIMRNIFKTNEQVTESMLRDAIIDDLQ
EFLFDQTERHPMILPMLVTV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactgaacgtcaagaataacgaaactgccgtttttgccatggggggcttaggc
gaaatcggtaaaaatatgtatggcattcaatttcaagatgaaatcatcttgatcgactgt
gggatcaaatttccagaggatgaactactcggaatcgattacgtcattcctgattatgct
tacgcaatgactaatttgtccaaaatcaaggccttagtgatcactcacggacacgaagac
catattggtggtatccccttcctgttgcaacaaatgaatgttccgatttatgctgggcct
ttagctttagcattgatccgcggtaaattagaggaacgcggtttattaaaagacgctgag
ttacatgaaatcaacgaagataccgtcttaaaattccgtaaaactagcgtatcgtttttc
cgaacaacccattctattcccgatacgttaggcgttgccgtcaaaacaccacaaggaacc
attgttgaaactggtgactataaatttgacttaacaccagtgggcgaccaacctgcacca
aactttcaaaagatggctcgccttggtgaagaaggcgtcctttgtttaatgtctgacagt
accaacgctgaagtaccaagttttacgaagtcagaacgttttgtcgaacaatcattgaaa
catattatcgacaaaatcgaaggccggatcatctttgctacctttgcatccaatatctct
cggatcaaggaagctagtgatgccgcgttagccgctggccgtaaaattgctgtttttggt
cgtagtatgcaaaatgcgatcgttaatggtactgaattaggctacttaaatattcctgaa
gaaagtctagttgaaggcaatgaactaaatcatttaccagccaacaagattatgatcctc
tgtaccggctcacaaggcgaaccaatggcagcattaagtcgtatcgctaatggtactcac
cggcagatttccattcaacctggtgatacagttgtcttctctagtaatccgattccaggt
aacacaaccagtgttaaccatgtgatcaacgaattatctgaggccggcgccgaagtcatt
cacggtaaagttaataatgtgcatacttcaggtcacggtggccaggaagaacaaaaatta
atgctccgtttgatgaagcctaaattcttcatgccaattcatggtgaataccggatgttg
caattacacactgagttagctgaacagacccatgttcctgaagaaaacacctttatcatg
gaaaatggcgatgttttagccttaaccagcgactccgcgcggatcgccggtcacttcact
gccggtgacgtttacgttgatggtagtggtatcggtgatattggtaatgtggtacttcac
gatcgccaagtactttctgaagaaggtattgtcatcgtggtagcaacaattaaccttaaa
accaagcaagttttagctggccccgatattctctcacgtggctttgtctatatgcgtgaa
tctggcgaactaatcagtaagggtcaaaaacgaatttatcgaatcatgcgtaatattttc
aaaacgaacgaacaagtgactgagtcaatgttacgtgatgcgatcatcgatgatctgcaa
gaattcttatttgatcaaactgaacgccacccaatgatcttaccaatgctggtcacggtt
tag
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