Loigolactobacillus coryniformis subsp. torquens: LC20004_07580
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Entry
LC20004_07580 CDS
T05341
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03030
DNA replication
lcy03430
Mismatch repair
lcy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC20004_07580 (dnaE)
03430 Mismatch repair
LC20004_07580 (dnaE)
03440 Homologous recombination
LC20004_07580 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcy03032
]
LC20004_07580 (dnaE)
03400 DNA repair and recombination proteins [BR:
lcy03400
]
LC20004_07580 (dnaE)
Enzymes [BR:
lcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LC20004_07580 (dnaE)
DNA replication proteins [BR:
lcy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LC20004_07580 (dnaE)
DNA repair and recombination proteins [BR:
lcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LC20004_07580 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
SSB
HROB
Motif
Other DBs
NCBI-ProteinID:
ATO43778
UniProt:
A0A2D1KNR8
LinkDB
All DBs
Position
1553200..1556541
Genome browser
AA seq
1113 aa
AA seq
DB search
MTFVQLQVKSAYSLLESSLTIADLVKNAKERGYGALALTDFQSLSASIDFYNACQAAAIQ
PILGLTIAPSGVFAAEQAAPLLVYALDHPGYQALLKLSTQVMTSETLLSLAELQPYLSHL
AVITPAYAAELPELAVNDLPQAQRYVQRLQALAPAQVRIGVSLQPEGQPYVAALKQLSQL
SNVPLIALEDVQYLDPQDAFSVTVLQHIKAGTTIEDTTTQADGTHYLMPAAQVAERYQAN
GLAAAAAETTKLAAASQLDIKLHNSLLPKFPVPTKQSSHVYLRQVAETGLQQRFSDGKIP
PAYQQRLDYELGVIQKMGFDDYFLIIWDVMQYAHKVNILTGPGRGSAAGALVAYALAITE
VDPLEYNLLFERFLNPERHNMPDIDLDIPDNKREQLLQYVHEKYGQQHMAQIITFGTLAA
KQALRDVGRVLGLTQFEMADWSQAVPNVLHIDLKTAYDQSLRLRNLVSDSPRNQLLFATA
TKLEGLPRHYSTHAAGIVLSDQDLTDYLPLQTGSEGILLTQLPMGNVEALGLLKMDFLGL
RNLSILANALNLIKLQTGQVLPIAQVPLDDAATLALFQRGDTDGVFQFESSGIKNVLREL
QPTSFEDIVAVNALYRPGPMANIPTFIQRKHEQKEPDYPDQRIATILAPTYGVLVYQEQV
MQVAAAMGGFSLGEADSLRRAMSKKKKAVIDAKRDEFVTGALKRGYTRESATQMYDYIER
FANYGFNRSHAVAYSMVAFQLAYLKAHYPAAFFAALLNSVIGNPTKTKSYLAEAKKRHLT
ILPPDINQSQLTYTVRRPNKILFGLLCIKGLRRQFVTDLLAERRANGRFTSLEQFLQRLA
KLDDKWLSMNYLEPLIYSAAFHEFNSNRGALLKRVPQLIANTNFSGQSELLAEELALKEE
AVPDLSLAEKLDQEETYLGAYLSGHPVEKYANLQWLKPTVAISELVAGKRQAVLLFVKRI
KVIRTKRGEQMAFLTANDPTDEVDVTVFPRLYRQISPWLEKGQVIYVAGKADAQRGELQL
IAEQIQAAADLEQQLPQKMLFLRLEATQTTQVQKLLQKHKGATPVLLFYPTTKRKLLLRQ
NYWIDLASEVVGQLAAVLGDDNVVVKAQTLPAP
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgacctttgtacaattacaagtaaaaagtgcttatagtttacttgaaagttcattgacg
atcgccgatttagttaaaaatgctaaggagcgggggtacggtgcgctggcgctaactgat
tttcaatcattatcagctagtattgatttttataacgcttgccaagcagcggctattcaa
ccaatattgggtttaaccattgcacctagtggggtgtttgcggcagaacaagctgcgcca
ttgttagtttatgcgttagatcatccggggtaccaagctttattaaagctatcaactcag
gttatgactagtgaaactttattatctttggctgagctacagccctatttaagtcatcta
gcggtgattaccccggcttatgctgctgaattaccagaattggcggtcaatgatttgccg
caagcacagcggtatgtacaacgcttgcaggcacttgcgccggcgcaagtacgtattggc
gtcagtttacagccagaaggacaaccatacgtagccgcattaaagcagttaagtcagctg
agcaatgttccgttgatcgccttagaagatgtccagtacttggatccacaagatgctttt
agtgtaacggttttgcaacacatcaaagccggtacgaccatagaagataccacgactcag
gcggatggtacccattacttgatgccagcagcacaggttgccgagcgttatcaggctaat
ggtttagcagctgctgcagctgaaacgactaaactggcggctgctagtcaattagacatc
aagctacacaattcgttgttgcctaagtttccagtaccaaccaagcaatcaagccacgtt
tatttacgccaggtcgctgaaactggattgcagcagcgctttagtgacggtaagattccg
cctgcctatcagcaacgcttggattatgagcttggcgtgatccagaaaatgggtttcgat
gattattttctaattatctgggatgtcatgcagtatgcgcataaggtcaatattctgact
ggaccaggacgtggttcagcggccggcgctttagttgcttatgcattagccattactgaa
gttgatccgctggaatataatctgttatttgagcgcttcttgaaccctgaacggcacaac
atgccggatatcgatttagatattcctgataataaacgggagcagttactgcagtatgtg
catgaaaaatatggtcaacagcatatggcgcagatcatcaccttcgggacgttggcagct
aagcaggcattgcgggacgtcgggcgcgttttagggctgactcagtttgaaatggccgat
tggtcccaagctgtgcctaatgtgttgcatattgatttaaaaaccgcctatgaccaatct
ttacgtttgcgtaatttggtcagtgatagtccgcgtaatcaacttttatttgctactgcc
actaaactggaggggttgccacgacattattcaacccatgctgctgggatcgtcttaagt
gatcaggatcttactgactatttgcctttgcaaaccggtagcgaaggtattttattgact
cagttgccgatgggaaatgttgaagcgctaggcttgttaaaaatggactttctaggttta
cgtaatcttagtattttggctaacgctttaaatttgatcaagttgcaaaccgggcaagtt
ttaccgattgcacaagtaccattggacgatgcggctacgttggctttatttcagcgtggt
gatacggatggtgtctttcaatttgaatcgagtggtattaaaaatgtgttgcgtgaatta
caaccaactagtttcgaagacatcgtggcggtcaatgcgttgtatcgaccggggccaatg
gcaaatattcccacgtttattcaacgtaaacacgagcaaaaggagcccgactatcctgac
caacggatcgccaccattttggccccaacttatggagtgcttgtttatcaggaacaagtc
atgcaggttgccgcagctatgggtgggtttagtttaggtgaggccgatagtttgcgtcgg
gcgatgagcaaaaagaaaaaggccgtgatcgatgctaaacgggatgaatttgtcaccggc
gcgttaaaacgtggctatacccgggagtcggcaactcaaatgtatgattatattgagcgt
ttcgccaattatggtttcaatcgatcccatgcggtcgcctatagtatggttgctttccaa
ttagcttaccttaaggcacattatccggcggctttttttgcggctttgctgaactcagtg
atcggtaatccgactaaaactaaaagctatttggctgaggccaaaaaaagacacttgacg
atcttaccgccagatattaatcagagccagttaacttatactgttcggcgcccgaacaag
attttgtttggcttattatgtatcaagggcttacgacgtcaatttgttactgatttattg
gcggaacggcgggccaatggtcgttttacttcgttggagcaatttttgcaacgtttggcc
aagttagatgataaatggttgagcatgaattatctagaaccgttgatctatagtgcggct
tttcatgagttcaatagcaatcgtggggcgctcttaaaacgggtaccgcaattgatcgcc
aatacaaattttagtgggcaaagcgaattattggcggaagaattagctctaaaggaagag
gcggtacctgatttaagcttggcggaaaaattagatcaagaggaaacttatttaggtgcc
tacttatctggccatcccgtagaaaaatatgccaacttacagtggcttaagccgactgtg
gcgataagcgaattagtggccggtaaacggcaagccgtgttattatttgtcaagcgtatt
aaagttattcggactaagcgcggtgagcaaatggcttttttgacggcaaatgatcctacc
gatgaagtggatgtcacggtttttccgcgtctttatcgacaaattagtccgtggttggaa
aagggccaagtcatttatgtggcgggtaaagcggatgcccaacgtggtgaattgcagttg
atcgccgaacaaattcaagcggcagctgatttagaacaacaattgccgcaaaaaatgtta
tttctgcgtttagaggcgactcagaccacgcaagtgcaaaagttgttgcaaaaacacaag
ggcgcaaccccagttttattattttatccgacaacgaagcgtaaattattattgcggcaa
aattattggatcgacttagccagtgaagtggttggacagttagcggctgttttaggcgat
gataatgtggtcgtgaaagcgcaaacgttgccggcgccgtga
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