Loigolactobacillus coryniformis subsp. torquens: LC20004_11050
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Entry
LC20004_11050 CDS
T05341
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC20004_11050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcy03019
]
LC20004_11050
Messenger RNA biogenesis [BR:
lcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LC20004_11050
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Phage_holin_3_6
Propep_M14
KH_2
FUT8_N_cat
UPF0154
Motif
Other DBs
NCBI-ProteinID:
ATO44400
UniProt:
A0A2D1KQJ5
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Position
complement(2267174..2268736)
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AA seq
520 aa
AA seq
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MSLFITIILAVIMLVVGLILGYAVRKSIHEKQLAMAHNTADSIIADAKKEAETQKKEALL
EAKDENHRYRAEIENELKERRGEVQKQENRVLQREETLDRKDDTLDKKERLLEKRETTLG
SRQQLIDEKQKEVSSLIEQQQAELERVAALSQEDARNMIITQTKSDLAEERAVMIKESEA
DAKETADRTAKSLIAYAIQRSAADSVSETTVSVVNLPNDDMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPVRREIARMALEKLIQDGRIHPARIEEMVEKSRKEMDERIR
QIGEQAIFDVGIHNMHPDLIKILGRLHFRTSYGQNVLNHSIEVAKLVGALAAELGEDVTL
AKRAGLLHDIGKALDHEVAGSHVEIGVEIARKYHENEVVINAIASHHGDVEPTSVIAVLV
AAGDAISAARPGARSESLENYIHRLEKLEAITNDFKGVKTSYAIQAGREVRVMVKPEEIN
DLQAVTLAHDIRKRIEDELEYPGHIKVTVIRETRTVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagtctatttatcacgataatcctcgcagtcatcatgttagttgtcggtttaatctta
ggctatgctgtgcgtaagtcaattcatgaaaaacagttggctatggcacacaataccgct
gatagcatcatcgctgatgcaaaaaaagaagctgaaactcagaaaaaagaggcactttta
gaagcaaaagatgaaaatcatcgttatcgggctgagattgaaaatgagttaaaagagcga
cgtggcgaagttcaaaaacaagagaatcgcgtcctacaacgtgaagaaacacttgaccgc
aaggatgatacgttggacaaaaaggaacgactcttagagaaacgagaaacaacgctaggt
agcagacaacaactcattgatgagaagcagaaggaagtatcctcactgattgaacagcaa
caagctgagttagagcgcgttgctgcgttatcccaagaagatgctcgcaatatgatcatt
actcaaaccaagtctgacttggccgaagaacgtgcagtgatgatcaaggaaagcgaagct
gatgctaaggaaacggcggatcgtaccgctaaaagtttgattgcctacgcgattcagcgt
agtgctgcggattcagtatcggaaacgacagtctctgttgttaacttaccaaatgatgat
atgaaaggtcgcattattggtcgcgaaggtcgtaatattcggactttagagaccttaact
gggatcgatttaattatcgacgatacaccagaagccgttattttaagcggctttgatcct
gtccggcgcgaaattgcccggatggcactggagaagctgatccaagatggtcgaatccat
ccagcgcggatcgaagaaatggtggagaagtcacgcaaggaaatggatgaacgaatccgg
cagatcggtgaacaagcgatttttgatgtcggtattcataatatgcatcctgatttaatc
aaaatattaggtcggcttcattttagaaccagctatggtcagaatgtgttgaaccactcg
atcgaagttgccaaattagttggcgcattagctgcggaattaggtgaggatgttacatta
gcaaaacgcgcaggattattacacgatattggtaaggctttggatcatgaagttgctggg
tcacacgtcgaaatcggcgttgaaattgcccggaaatatcatgaaaatgaagttgttata
aatgcaattgcatcacatcacggggacgttgaacctacttccgtcattgcagtattggtg
gcagctggggatgctatctcagccgcccgtccgggagcacgttccgagtccttagaaaac
tatattcatcgactggaaaaacttgaagcaatcaccaatgatttcaaaggggttaaaacc
agttatgccattcaggcaggccgcgaagtacgggtcatggttaaaccagaagaaattaat
gatttacaggcggtaacattggctcatgatattcgtaaacgaattgaagacgagttagaa
tatcctggtcacatcaaagtcaccgttattcgagaaacaagaacagttgaatatgctaaa
taa
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