Loigolactobacillus coryniformis subsp. torquens: LC20004_11345
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Entry
LC20004_11345 CDS
T05341
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lcy
Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC20004_11345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcy03400
]
LC20004_11345
DNA repair and recombination proteins [BR:
lcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC20004_11345
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LC20004_11345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
DnaJ_CXXCXGXG
SMC_N
AAA_21
nSTAND1
TMEM106_N
AAA_29
AAA_25
AAA_16
AAA_15
AAA_22
RsgA_GTPase
DUF463
DUF4350
Anti-TRAP
cobW
nSTAND3
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ATO44459
UniProt:
A0A2D1KQW5
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All DBs
Position
2327282..2329771
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AA seq
829 aa
AA seq
DB search
MQNKQPEQIEVRGARVNNLRNIDVDIPLHQFVAITGLSGSGKSSLALGVLYAEGARRYLD
ALSTYTRRRISQMGKADVRVVRHLPAALALRQRPNVPSQRSTVGTMTESFNVLRLLFSRL
GSHVSPSGQRVAPTLHVAEELPIDAGDGTSFFGPGAERFAFNSAGACPTCQGSGQIRQIV
SERLIPDDNLTIRDGAVASWRLPGRNFMPLVAQAIGVDIDTPFKQLSAADRDIVLHGEKK
KYAINIPTATGKIFHMDNAQFENAFAAVTDSLATTKNERAIQRLNRFYSFTTCPTCHGNR
FDPKLLQTLVAGKNIAEVSDLPLKDLSAFAQTIVPWLPAKMHKIGQTLVNEFTNSLTPLL
ELGLDYLTLSRAGMTLSTGELQRIQLSRTLRTATTGVLYVLDEPSIGLHPANVTGLIKIM
RALVDQGNSLVVVDHNTHVIAAADTVIEIGPGAGRKGGQILHQGSVAQIKQQADSLIAPY
LTGQADLLARQPQPDIFGAGKFSFHVKQRYNLRDVTAQFPLNRLSVVTGFSGAGKTTLIL
DSLVPALQAQIKGKPLPQHVDRLQADLQRVVMIDSTPVGKNTRSTVATYTGILDRLRKLF
AQTPAAKAHHWGAAHFSYNTTQGACPTCKGTGHISLDVQYLPDIDQACPTCHGQRYNPET
LQIKWHELSIADILALSVDQAVPLFAKYKSLHHLVLALQSMGLGYLKLGEATPQLSGGEA
QRLKLVAEMGQTQAGTLFIFDEPSVGLHPLDTRTLIHVFDQLLDQGATIITIEHDLDIVS
NADYVVDVGPRGGNAGGKIVASGTPQQIAANTNSITGKYLAQQLQLFHV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaataaacaacctgagcaaattgaagttcgtggtgcgcgggtcaataatctgcgg
aacattgatgttgatatcccgctgcaccaatttgtcgccattactggtttatctggttct
ggtaaatcgtcgctagcactcggtgtactttacgctgaaggcgcacggcgctacttagat
gcactgtccacttatacgcggcggcgaatcagtcaaatgggtaaagcggacgttcgtgtt
gtccgccatttgccggcagccttagcactacgccagcggccaaatgtgcctagtcaacgt
agcaccgttggcacgatgacggaaagtttcaacgttttacgtttgttattctcacggctt
ggctcccacgtatcacctagtggccagcgggtggccccaactttacacgttgccgaagag
ttaccgatcgatgctggcgacggcactagcttttttggccctggtgctgaacgtttcgcc
tttaattctgccggtgcctgcccgacttgtcagggtagcgggcaaatccggcaaatcgtg
tctgagcggctgattcctgacgataatttgacgattcgcgacggtgcagtagcttcttgg
cgcttgcctgggcgtaactttatgccgctagtcgcgcaagcaatcggcgtcgatattgac
acaccatttaaacagctaagtgccgccgaccgcgatattgtccttcatggtgagaaaaag
aaatacgccattaatattcctaccgccaccggcaaaattttccatatggataacgcccaa
tttgaaaatgcatttgctgcagtgaccgatagtttagcaactaccaaaaatgaacgggca
atccaacgtttaaatcgcttctattcttttaccacttgcccaacttgtcatggtaatcgg
tttgacccgaagttgctgcaaactttagtcgctggtaaaaacattgctgaagtcagcgac
ttaccactaaaggatctatccgcctttgcccaaaccatcgtaccttggttaccagcaaaa
atgcacaagatcggccaaaccttagtcaatgaatttaccaatagcttaacgccattgctt
gagctgggcttagactatttaacgttgagccgtgctgggatgacattatcaactggcgaa
ctgcagcggatccagcttagtcgtaccttgcgcactgcgacaaccggcgtgctttacgtt
ttggatgaaccatcgattggtttacatccggctaacgttaccggcttgatcaaaatcatg
cgcgccttggtcgatcaaggtaattcattagtggtagttgatcacaacacacacgtaatt
gctgcagccgatacagtgattgaaattggtcccggtgctggccgtaaaggtgggcagatc
ttacatcaaggcagcgttgctcaaatcaaacagcaagcagattcactgattgcgccttat
ttaactggtcaagctgatttattggctcggcagccacagccggatatttttggtgccggt
aagtttagtttccatgtcaagcagcgctacaacttacgtgatgtcaccgcacaatttcca
ttaaatcgtttaagtgtagtcactggtttttccggtgccggtaaaacgactttgattctt
gatagcttagtcccagcactacaagcacagatcaaaggaaaaccgctgccgcaacacgtt
gatcgactacaagcagatttacagcgtgttgtgatgatcgactcgacaccagttggtaaa
aatacacgttccaccgtggccacttatacaggtattcttgatcgtttacgtaaattattt
gcccaaactccagccgctaaagctcaccattggggtgcggcgcatttttcttacaatacc
actcaaggtgcgtgcccgacttgtaaaggtactggccatatttccctagatgtgcaatat
ctgccggacatcgatcaggcctgtcccacctgccacggccagcgctataatcccgagaca
ctacaaattaagtggcatgaactatcgatcgccgatattttagctttatccgtcgaccaa
gctgtccctttatttgccaaatacaaaagcttgcatcacttagttttagccttacagagt
atgggacttggctacttaaaactcggcgaagcgaccccacaattatctggaggcgaagca
caacgcctaaaattagtggccgaaatgggacagacgcaagcaggtacgttatttatcttc
gatgaaccctctgttggattgcatcccttggatacacggacactgatccatgttttcgat
caattactggatcagggcgctacgatcattacgatcgaacatgatctcgacattgtgtct
aatgccgattatgttgttgatgttggtccccgcggtggtaacgccggcggcaaaattgtg
gctagtggtacgccgcaacaaattgctgccaataccaacagtatcactggtaaatatcta
gcccagcagctgcagctttttcatgtttaa
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