Lacticaseibacillus paracasei Zhang: LCAZH_0308
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Entry
LCAZH_0308 CDS
T01280
Name
(GenBank) Rad3-like DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lcz
Lacticaseibacillus paracasei Zhang
Pathway
lcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LCAZH_0308
09124 Replication and repair
03420 Nucleotide excision repair
LCAZH_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcz03021
]
LCAZH_0308
03036 Chromosome and associated proteins [BR:
lcz03036
]
LCAZH_0308
03400 DNA repair and recombination proteins [BR:
lcz03400
]
LCAZH_0308
Enzymes [BR:
lcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LCAZH_0308
Transcription machinery [BR:
lcz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LCAZH_0308
Chromosome and associated proteins [BR:
lcz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LCAZH_0308
DNA repair and recombination proteins [BR:
lcz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LCAZH_0308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
ResIII
PDDEXK_1
DEAD
DEAD_2
HBB
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADK17601
UniProt:
A0AAP4JIX9
LinkDB
All DBs
Position
complement(301385..303769)
Genome browser
AA seq
794 aa
AA seq
DB search
MANNRIGIREFVELTVRTGDLNPITSNSNNTAIIGSQIHRKLQAAHRESDYEREVYLKTA
VTVNDEDYQLEGRADGVWTDDTGLTVEEIKTSARPWEEATQNTKDRYWAQARIYGHLLCE
QRHLDQATITLVYVQTSTDTVSRFSEVKSAAELADDFTDLLEEFRDWLKLRSDIIKRRNT
SIDQLDFPFPQFRAGQHELAAAVYKAIYSQARLFVQAPTGTGKTISALFPTLKAMGTGLI
QRAFYLTAKQSTRRVAEQAMALMAQAGLTAKSITLTAKDTITFADEPDDPSKNPYMLGYY
DRLKPALHDLLEHEDQLTRPVIETYARKHRLDPFEFSLDASLFCDVIICDYNYLFDPLVF
LQRFFSEKDDSNFFLIDEAHNLVSRARDMYTAAITDQDFVQLKKALTPYKGAPLTKVRRA
MTRILNTLDATTSTLLTSQPTIFQDDPLDDLTAVLFRFTEVVHDWLSEPPTPALQPAVDL
ILPVFFLANQYLRIGDFYDATFKTEVTKENGQIMVKELCLDPSQFVDEALKKGRGAVLFS
ATLSPMAYFQKLLGGIDNSLAYTLPSPFDPAKQAVIVDASVNTTYRRRTQDLPQLIASLT
TLVRTKSGNYLFFFPSYAYLKTAYEAFTAANPDLKVCAQENAMTEADRQTFLDHFQTGSE
PIIGFAVLGGIFAEGIDLKGNRLIGVAIISVGLPGINAETDQLRAYFDRANGQGFAYAYQ
LPGFNNVLQAGGRVIRGTKDIGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL
THFWEAHHENTAHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaatcgcattggtattcgtgagttcgttgagttaaccgttcgcaccggcgac
ctcaatccaatcaccagcaattcaaataacaccgccatcattggtagccaaattcatcgt
aaacttcaagctgctcaccgtgagtccgattacgaaagggaggtttacctcaaaaccgcc
gtcaccgtgaacgatgaagactatcagctcgaaggccgagcggatggtgtctggacagat
gacaccggcctcacagttgaggaaatcaaaaccagtgcgcgcccatgggaagaggccaca
caaaatacaaaagaccgctattgggcgcaagcacgtatttatggccatctactttgtgaa
caacggcatttggatcaagcaacaatcacgctggtttatgtccagaccagcaccgacaca
gtcagccgtttcagtgaagtcaaaagtgccgccgagttggctgatgatttcactgattta
cttgaagaatttcgcgactggctcaaactacgtagtgatatcatcaaacgacgcaacacc
tccatcgaccagcttgattttccatttccgcaattccgagctggtcaacatgagctagcc
gccgctgtttataaggcgatctatagccaagcacgtttgtttgtgcaagctcccaccggc
actggtaaaaccatctctgcacttttcccaaccttaaaagcgatgggcacgggcttgatc
caacgagccttttacctaactgccaagcaaagcactcgacgcgtggctgaacaggcgatg
gccttgatggcgcaagcaggtttaaccgccaaaagtatcactttaacggctaaagacacc
atcacatttgctgacgaacctgatgaccccagcaagaatccttacatgttaggttactat
gatcgcctaaaaccagccttacacgatctactggaacacgaggatcaactgacacgtccc
gtcatcgagacttatgctcgcaaacataggctcgatccatttgaattttcactggatgcc
agcctattttgcgacgtcatcatctgtgattacaattatctctttgatccgctggttttt
ttgcaacgcttttttagtgaaaaagatgacagcaatttcttcctgatcgatgaagcgcac
aacttagtcagtcgcgcgcgggacatgtacaccgctgccatcacagatcaagatttcgtc
cagttaaaaaaagcgctaaccccttataaaggtgcccctttgacaaaagttcgccgcgcc
atgacacgtattttgaatacccttgatgcaacgacttcaaccttgttgacctcacaaccg
accatctttcaagatgatccgcttgatgacctcaccgcagttctttttcgcttcactgaa
gtcgttcacgattggctcagcgaaccgccaacccccgcgttgcaacctgctgtcgatctc
attttgccggtattttttctagccaatcaatatctgcgaattggcgacttctatgacgcg
acattcaaaaccgaagtcactaaagaaaacggccagattatggttaaagaactgtgtctc
gatccatcgcaatttgtggacgaagccttgaaaaaagggcgtggtgccgtcttattttcg
gcgaccttatcaccgatggcatattttcaaaagttgcttggcgggatcgacaacagtctc
gcctatacgctgccctccccatttgatcccgccaaacaagcagttattgttgacgctagt
gtcaatacgacttatcgacgacgcacgcaggatttgccgcagttgattgcgagcctgaca
acattagttcgcaccaaaagcggcaattatctcttcttttttccatcctatgcctacttg
aaaacggcctatgaagccttcactgcggcgaatcccgatctaaaggtttgcgctcaagaa
aatgccatgactgaagcggatcggcaaacatttctagatcattttcaaactggcagtgaa
ccgattatcgggtttgccgtgcttggcggtatctttgctgaaggcattgatctcaaggga
aatcgactgattggcgttgcaattatctccgtagggttgccgggtatcaatgctgaaacc
gatcaactgcgggcctattttgatcgggcgaatggtcaaggattcgcatatgcctatcag
ctgccgggtttcaataacgtgttacaagcaggtggccgcgtcatccgcggtaccaaggac
atcggggtcattctgctgattgacgaacggtttattactccacgttatgcccgccttttt
ccagatcactggacccacgcccaagtcagctacaacccaacgcaattagctcaactcttg
acgcatttctgggaggcccatcatgaaaacacagctcacgcttga
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