Lacticaseibacillus paracasei Zhang: LCAZH_0919
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Entry
LCAZH_0919 CDS
T01280
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lcz
Lacticaseibacillus paracasei Zhang
Pathway
lcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCAZH_0919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcz03019
]
LCAZH_0919
03016 Transfer RNA biogenesis [BR:
lcz03016
]
LCAZH_0919
Enzymes [BR:
lcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LCAZH_0919
Messenger RNA biogenesis [BR:
lcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCAZH_0919
Transfer RNA biogenesis [BR:
lcz03016
]
Prokaryotic type
tRNA degradation factors
LCAZH_0919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
S1CSD-TOTE-2
CSD
VQ
Motif
Other DBs
NCBI-ProteinID:
ADK18165
UniProt:
A0A1J3CFY7
LinkDB
All DBs
Position
906980..909349
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AA seq
789 aa
AA seq
DB search
MTTVGHIRNELLATFRKNPKIDYSVQTLSRALKLNEGTDFKTLVQALTGMENDNLIHPIS
EGRYAWGGTPKVLTGIFHGNEKGFGFVAIEDQDNDVYVPSTSTDFALDGDTVEVRIVREA
RPNDTRGPEGEITKVVERSLTTLVGEFKPFSDKDRAKSGFIGMVVSHEKKLKNFPVYVKD
TGTMPQLGDMTVTEITEFPNEHHPKLMYGMVVETLGNKNDPGVDIMSLVMQNHIKTEFPD
EVMTQTNDIPDHVTPEERVNRKDITDQAVVTIDGDDSKDFDDAVVVWKLPNGNFHLGVHI
ADVSHYVTEGSALDKEAFDRGTSTYLVDRVIPMLPFRLSNGICSLNPGVDRLAMSCDMEI
DQDGHVVNHEIYQSIIKSHARMTYNNVNKIVTDHDPEVMAEYQELVPMFEDMVQLHQILY
KMRHARGAIDFEENEAKIIVDDMGHPTDIVLRERGVSERMIESFMLAANETVAEHYNKQH
LPFLYRVHETPDADRIKEFMEFIASFGITVPMKKGKEITPKQLQDVVTDVTGTPEEAMVS
VKMLRSLKQARYSPDPLGHFGLAAKYYCHFTSPIRRYPDLVAHRLIRDYAVEGTGDDIKA
SWNKKLPDIAAQASMAERRSIDAERAVDDLKKAEFMADKVGEEFDAVVSGVTSFGMFVAL
PNTVEGLVHITRMTDDYYSFIDSQMALVGERTKRTYRIGQSLRVKLDNVDIDQRQVDFSL
IPDENTPTSDLGKFVKKEDRRERRPNGNKPGFGNNNHGGPNRNQHNNRPRKPAGAPHQGK
HYNAKRGTK
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagttggccatattcgtaatgaacttttagcaacatttcgtaaaaatccgaag
attgattattcggtccagacgctgagtcgtgccttgaaattaaacgaaggcactgatttt
aaaacgctggttcaagccttaactggtatggaaaatgacaatttaatccatcccattagt
gaaggccgttatgcttggggcggcacgcctaaagtgttgacaggtattttccatggcaat
gaaaaaggttttggtttcgttgcgattgaagatcaggacaatgatgtttatgtgccgtca
acgagcactgattttgctttggacggtgataccgttgaagtccgtatcgtccgtgaagca
cgtccaaacgatacgcgtggaccagaaggcgaaatcactaaggttgttgaacgcagccta
acgacacttgtaggcgaattcaaaccattttccgacaaagatcgggccaagtctggtttt
attggtatggttgtcagccacgagaagaaactgaagaattttccggtttatgtcaaagac
actggtaccatgccgcaattaggcgacatgacggttaccgagattacggaatttcctaat
gaacaccatccgaagctgatgtatggcatggtggttgaaacattgggaaataagaatgat
cccggtgtggatattatgtcattagtgatgcaaaaccatatcaagactgagtttcctgat
gaggtaatgactcaaactaatgatatcccggatcatgtcaccccagaagaacgggtgaac
cgtaaagatatcaccgatcaagccgttgtgacgattgacggcgacgacagtaaagacttc
gatgatgccgttgtcgtttggaaattgccaaacggaaacttccatcttggtgtgcatatt
gcagacgtgtcgcactatgttacagaaggctcagcgttggacaaagaagcgtttgatcgc
gggactagtacgtatctggtcgaccgtgtcattccgatgctgccattccggctgtctaat
ggcatttgttcgttgaatcctggcgttgatcgcttggcgatgtcttgtgatatggaaatt
gatcaagatggtcacgtggttaatcacgagatttatcaaagcatcatcaagagccatgcg
cggatgacttataacaacgtcaacaagattgtgaccgaccatgacccagaagtgatggcc
gagtatcaggaacttgtgccgatgtttgaagacatggttcaactgcatcaaattctttac
aagatgcggcatgctcgaggtgccattgacttcgaagaaaacgaagccaagatcattgtt
gatgatatgggtcacccgacagacattgttctgcgtgagcgtggtgtgtcagaacgaatg
attgaatccttcatgttggccgctaacgaaaccgtcgctgaacattacaacaagcaacat
ttaccattcttataccgggttcacgaaacaccagatgccgaccgcattaaagaattcatg
gaattcattgctagttttggtatcaccgtgccgatgaaaaaaggcaaagaaatcacccca
aagcaacttcaggatgttgtgacagatgtcaccggcacgcctgaagaagcaatggtgagc
gttaaaatgctgcggagtttaaaacaggctcggtattcaccagatccacttggacatttt
ggcttggcagcaaagtattactgccactttaccagtccaattcggcgttatcctgacttg
gtcgctcatcgcttgattcgtgattatgcggttgaaggcactggcgacgatatcaaggca
agctggaataagaaattaccagatattgcagctcaggcatccatggcggaacggcggagc
attgacgctgagcgtgcagttgacgatcttaagaaagctgaatttatggctgataaggtc
ggcgaagaatttgatgctgttgttagcggcgtgacgagctttgggatgtttgtggctttg
ccgaacaccgtagaagggcttgttcatatcacgcggatgaccgatgattattattcattc
atcgatagtcagatggctttagttggcgaacgcaccaagcgcacgtaccgaattggccag
tctttgcgagttaaacttgataatgttgatattgatcagcgacaggtagacttttcattg
attcctgatgaaaatacgccaacaagtgatctgggcaagttcgtcaaaaaagaagaccgg
cgtgaacgtcggccaaatggcaacaagcctggttttggcaataataaccatggtgggcca
aatcgtaatcaacacaacaatcgaccacgcaaaccagctggtgcgccacatcaaggcaag
cactataatgccaagcgcggcactaaataa
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