Lacticaseibacillus paracasei Zhang: LCAZH_2606
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Entry
LCAZH_2606 CDS
T01280
Name
(GenBank) excinuclease ATPase subunit
KO
K03701
excinuclease ABC subunit A
Organism
lcz
Lacticaseibacillus paracasei Zhang
Pathway
lcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCAZH_2606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcz03400
]
LCAZH_2606
DNA repair and recombination proteins [BR:
lcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCAZH_2606
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCAZH_2606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_29
DnaJ_CXXCXGXG
AAA_21
nSTAND1
AAA_16
RsgA_GTPase
AAA_23
AAA_25
nSTAND3
Viral_helicase1
Zn_ribbon_TFIIB
ATPase
Motif
Other DBs
NCBI-ProteinID:
ADK19794
UniProt:
A0AAP4JHX9
LinkDB
All DBs
Position
2551418..2553946
Genome browser
AA seq
842 aa
AA seq
DB search
MAIPDHISVRGAYVNNLKHLNVDIPLNKLVAITGRSGSGKSSLAMGVLYAEGMRRYMSAL
STYTRRRLGQTSPAAADSVRHIPSAIALRQRPTVPGIRSTVGTATEALNVIRLMFSRLGS
PVCPNGHRVSPTLDIAKAMDLPNDGESGMGMITCPTCGVRFMAFAAEDFAFNSTGACPTC
GGTGQARTLAANRLIPDQTLTIRQGAVASWRLPGRNFMPFVAQAIGIDIDTPFQDLPKDQ
QEQVWHGERKKYAINIPSKTGKIFHMDHAQYENAFNAVEDSLATTKNERAIQRLNRFYEF
GICPTCHGSRFAPKLLSQHLVDQNIAQVSDMTLTQLAAFIPEIYHWLPADMQSLAHDIIQ
ELTQLLKPIMDLGLSYLTLSRAAASLSTGELQRIQLSRTLRTETTGVLYVLDEPSIGLHA
ANVSGLLEVMHGLVNQGNSLVVVDHNTAIIEAADQVIEIGPGAGVAGGRLIDQGSPEAIS
HDTHSLIAPFLTGAAPLIVRPQAGEQEIKQTKQLQLTVTDRFNLHDLHVHFPVNCFSVVS
GFSGAGKSTLIFDALVPALSATADQPAPAFVRDLDRGGLRHVVAIDATPVGKNVRSTVAT
YTDILDHLRHLFASLPDAKAKHYTSSHFSYNVKAGACPTCGGTGVINLDIQYLPDMQQTC
PTCHGRRYNPEVLKIKWQQHSIADLLDLDVDSALTVLKDEPAITHTLQTLHDMGLGYLHL
GESTPTLSGGEAQRLKLVAHMGRSQKDTLFVFDEPSVGLHPLDVQTLIAVFQRLLKTGAT
VIAIEHDLDVIANADYVLDLGPKGGAEGGRVMAAGTPQAIAKQGKGETAPYLAAHLAAFH
VK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcccgatcatatcagtgttcgcggcgcttacgttaacaacttgaagcatctc
aatgttgatattccgcttaacaaactggtggcgatcactggtcggtctggttccggtaaa
agttcattagccatgggcgtgttatacgctgaaggtatgcgccgctacatgagtgccttg
tccacctacacccgccggcgccttggccaaacaagtcctgctgctgctgactcagtacgc
catatccctagtgccatcgctttgcggcagcggccaaccgttccaggcatccgctcaact
gtcggtacggccacagaagcgctcaacgtcattcgcctcatgttttcccgtctcggctcg
ccggtttgtcctaatggtcaccgcgtgtcgccaactctcgatattgccaaggcaatggat
ctgcccaatgacggtgaaagtggtatgggcatgatcacttgtccgacctgtggcgtccgt
ttcatggcttttgctgctgaagatttcgccttcaattcaactggcgcctgcccgacatgc
ggcggtactggtcaagcgcgcacactggccgccaaccggctcatccctgatcaaacactg
acaatccgtcaaggtgccgtggcctcgtggcgcttacccggtcgcaattttatgcctttt
gtcgcacaagcaatcggcattgatattgatacgcctttccaggacctgccaaaagatcag
caagaacaggtttggcacggtgaacgtaaaaaatacgccatcaatatccccagcaaaacc
ggcaaaatttttcatatggaccatgcacagtacgagaatgccttcaatgcggtcgaagat
tctttagcgacgaccaaaaatgaacgcgccattcagcggctgaatcgcttctatgagttt
ggcatctgcccgacctgccatggcagccgatttgccccgaaattattgagccagcaccta
gtggatcaaaacattgctcaggttagtgatatgactttaacgcaattagccgcgttcatt
cccgaaatttatcactggttgccagcagatatgcagtcactggcgcacgatattatccaa
gaactgacgcaattgcttaagcccatcatggaccttggcctcagttacctgaccctgagt
cgagccgcggcttccttatcgactggtgaattgcaacgcattcagctcagtcgcacgctt
cggactgaaacgaccggcgtactttacgtccttgatgaaccgtccatcggtctgcatgct
gcaaacgtttctggattgctagaagtcatgcacggtttggtcaatcaaggcaactcgctg
gtcgttgtggatcacaacaccgccatcattgaggcagccgatcaagtgattgagattggt
cccggtgcaggcgttgctggcggccgactcattgatcaaggtagccctgaagcgatcagc
catgatacccattcgttgattgcaccctttttaaccggagcggctcccttgattgttcgc
ccgcaagccggtgaacaagaaattaagcaaaccaaacaactgcaattaaccgtaactgat
cgatttaaccttcatgacctgcatgtccattttccagttaactgcttctcagtggtatcc
ggcttttctggtgctggcaagtcaactttgatttttgacgccctagtaccagcgctgtca
gcaactgctgaccaaccagctccagcatttgttcgtgatcttgaccgcggcggcctgcgc
catgtagttgcgattgatgctacgccggtcggtaaaaatgtccgctcaaccgtcgccacc
tacacagacattctcgaccatctgcgacaccttttcgccagtttgcctgatgccaaagcc
aagcactatacgagtagccatttctcttacaacgtcaaagccggcgcgtgcccgacatgc
ggcggtaccggcgtcattaacttagatatccagtatctgcctgacatgcagcaaacttgc
ccgacttgtcacggccgtcgctacaaccccgaggttctgaaaatcaaatggcagcagcac
agcatcgccgacttgctagatctggacgtggactccgccttgaccgttctgaaagacgaa
ccggctattactcacacattgcaaaccctgcatgacatgggcctcggttatttgcattta
ggtgaaagtaccccgacgctgtctggcggtgaagcgcagcgcctgaagctagttgcccac
atgggacgctcccaaaaagacacgctttttgtcttcgatgaaccatcggtaggtctacac
cccttggatgttcaaacgttgatcgctgtttttcaacggttgctcaaaaccggtgcaacg
gttattgccatcgaacacgatctagacgtcatcgctaacgctgattatgtcttggatctc
ggaccaaaaggcggtgcagaaggtggccgcgtcatggctgctggcacaccgcaagcaatc
gccaaacaagggaaaggtgaaactgccccttacttggcggcccatctggcggcctttcac
gttaagtag
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