Lycorma delicatula (spotted lanternfly): 142324247
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Entry
142324247 CDS
T11193
Symbol
RtcB
Name
(RefSeq) rtcB RNA ligase isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lda Lycorma delicatula (spotted lanternfly)
Brite
KEGG Orthology (KO) [BR:
lda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lda03016
]
142324247 (RtcB)
Enzymes [BR:
lda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
142324247 (RtcB)
Transfer RNA biogenesis [BR:
lda03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
142324247 (RtcB)
Prokaryotic type
tRNA splicing ligases
142324247 (RtcB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
PHA01746
Motif
Other DBs
NCBI-GeneID:
142324247
NCBI-ProteinID:
XP_075221221
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All DBs
Position
4:205794783..205872298
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AA seq
506 aa
AA seq
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MVVRQYNEEMKYLEKITPYCWKIKKGFQPNMNVEGVFLVNNHLEKLMLDELRNACRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMGNPDSVVSPGGVGFD
INCGVRLLRTNLMEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASRMGIDCKGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARIN
SVEGQNYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFGMTPDDLDMHVIYDVSHNIAKVE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDTGM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLRKLEDMGISIRVASPKLVMEEAPESYKNVT
DVVDTCDAVGISSKTIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttcgtcagtataatgaagaaatgaagtacttagaaaagataacgccatattgc
tggaagattaagaaaggatttcaacccaatatgaatgtggaaggtgttttcttggtaaat
aatcacctagaaaaacttatgttggatgaattgagaaatgcatgtcgtcctggtatggtt
ggtggttttttgcctggtgtaaaacaaattgcaaacgttgctgctttaccagggattgtc
gggcgttctgtgggtcttccagatgttcattctggatatggttttgcaattggcaatatg
gcagcttttgatatgggtaacccagattcagttgtttcacctggaggtgttggttttgac
atcaattgtggcgttcgtcttttgagaacaaaccttatggaaaaagatgttttaccagtt
aaagaacagcttgcacaaagcatgtttgatcatattcctgttggtgttggttctaaaggt
attattccaatgaatgcaagagatttagaagaagctcttgaaatgggaatggattggtca
cttcgagaaggttatgtatgggctgaagataaagaacactgtgaagaatatggacgtatg
ttaaatgctgatccttctaaagtaagcttgagggctaaaaaaagaggccttcctcagttg
ggaacacttggagctggtaatcattatgctgaaatacaagtggtagatgaaatatatgat
aaatgggctgctagtagaatgggtattgattgtaaaggccagatttgtgtcatgatacat
tctggaagtagggggtttggtcatcaagttgcaaccgatgctctcgtagaaatggagaaa
gcaatgaagagggataagattgaaacaaatgacagacagttagcttgtgcaagaattaat
tctgtagaaggccagaattaccttaaatcaatggctgcagctgctaattttgcatgggtt
aatagaagttctatgacatttttaagtagacaggcatttgcaaaacagtttggaatgact
cctgatgatcttgatatgcatgttatttatgatgtctcgcataatattgccaaagttgaa
gaacatatggtggatggaaaacaaaaaactcttcttgttcatcgaaagggttctaccaga
gcatttccaccacatcatccattaatacctgttgattatcaattaactggacaaccagtt
cttattggtggtactatgggtacttgtagttacgtgcttactggcactgatactggaatg
aaagaaacatttggatctacctgtcatggagctggaagagccctatccagagcaaaatct
cgtagaaatcttgattatacagatgttttaagaaaattggaagatatgggaatctcaatt
agagttgcatcaccaaaattggttatggaggaagcgccagaatcttataagaatgtaacc
gatgttgttgatacatgtgatgctgtcggtataagtagtaaaacaattaaactaagacca
attgctgttattaaaggatga
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