Lycorma delicatula (spotted lanternfly): 142334345
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Entry
142334345 CDS
T11193
Symbol
Upf1
Name
(RefSeq) upf1 RNA helicase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lda Lycorma delicatula (spotted lanternfly)
Pathway
lda03013
Nucleocytoplasmic transport
lda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142334345 (Upf1)
03015 mRNA surveillance pathway
142334345 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lda03019
]
142334345 (Upf1)
Enzymes [BR:
lda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142334345 (Upf1)
5.6.2.5 RNA 5'-3' helicase
142334345 (Upf1)
Messenger RNA biogenesis [BR:
lda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142334345 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
142334345 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
AAA_16
nSTAND3
ATPase
SRP54
AAA_22
AAA_32
Motif
Other DBs
NCBI-GeneID:
142334345
NCBI-ProteinID:
XP_075238431
LinkDB
All DBs
Position
1:342748078..342846208
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AA seq
1115 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEGDLIGADTQGSEFDFTDFTLPSQSQTQASQLDSVQTQNQV
NGKINGDVLENSVVSTTQKLGELQFEEDDEEAFYNKELPLYACKYCAIHDPSCVVMCNVC
KKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRCFLSWLVKIPAEQDQLRARQVTST
QIAKLEELWRDNADATFSDLEKPGIDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQENVDVRWDVGLNKKTIAYFNLAKSDGDMKLMHGDELRLRYLGEMHKPWSGVGHV
IKIPDNFGEEVGIELKSSSGAPTSCTSHFVVDFIWKSTSFDRMQLALRKFAVDDNSVSGY
IYHRLLGHDVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTGKTV
TSATIVYQLVKQNGGPVLVCAPSNIAVDQLTEKIHRTSLKVVRVCAKSREAIDSPVSFLA
LHNQIRNMDCNTELQKLQQLKDETGELSSADEKRYRILKKAAEKELLDAADVICCTCVGA
GDPRLARLKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKASRAGL
SQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLVKMDFPWP
VADKPMLFYVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLRCGVKPEQIGVITPYEGQR
AYLVQYMQYQGALHSKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLN
VALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESMIQFSKPKQIV
NTANPGTHFMSTTVYDAREAMVPGSIYDRTGNNNAPPHYFPRSAGTGATLDMFGRTHDPI
SYISQERAQAALSNMAVPVGMFMNMAHIPPRFYNQHQQALQARQNQRGNRNIGSSRMRNK
MNSMAGKNKAGIGLSQTNSQDVTQPYSQGITQGMSQGMSQPGLSLSQPGLSQAELSQDSY
IVGEFQSQMDGLLSQDSTYQGDRYPGPAAHFSQPY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcgtacggtcctagttctcaaacgctaacctttttggatacagaagaa
ggtgatttaattggcgcggatactcagggatcagaatttgattttactgattttactttg
ccttctcagagtcaaactcaggcatctcagctagattcagtgcagacacaaaatcaggtc
aatggtaaaataaatggagatgttttagaaaacagtgttgtatctacgacgcagaagctt
ggtgaattgcaatttgaagaagatgatgaagaagcattctacaataaggaacttcctctt
tatgcttgtaaatattgcgcaatccatgatccaagttgtgttgtaatgtgtaatgtgtgc
aaaaagtggttctgcaatggaagaggaaatacatctggctcccacattatcaatcatctt
gtgagagccaaacataaggaagttacattgcacaaggatggtcctcttggggaaactgtt
ctggaatgttactcttgtggtgtgcgtaatgtttttgtattaggtttcatacctgcaaaa
gcagattctgttgttgtgctgttatgtcgtcaaccttgtgcagctcagagctctctaaag
gatatgaattgggatcaagaacagtggaagccgttgatagctgatcgttgtttcctttct
tggcttgtcaagattccagctgaacaggaccagttgagagcacggcaagtaacatccaca
cagattgctaaacttgaagaactgtggcgtgataatgcagacgccacgttttcagatttg
gaaaaacctggcatagatgaagaaccacagcaagtgctgctaagatatgaagatggatat
cagtatcagaatatatttgggcctcttgtaaaacttgaagcagactacgataaacgcctt
aaagaatcacagacgcaggagaatgttgatgttcgttgggatgttgggttaaacaaaaaa
accattgcttatttcaatcttgcaaaatctgatggagacatgaaattgatgcatggtgat
gaacttcgtttgcgttacctgggagagatgcataaaccttggtctggagttggtcatgtt
attaaaattcctgataactttggagaagaagttggtattgaactgaaaagctcaagtggc
gctcctacttcatgtacttcacactttgttgttgattttatatggaagtcaacttctttt
gatagaatgcagttggcattacgtaaatttgctgttgatgacaactccgtatctggttat
atttatcatcgtttgctcggtcatgatgtggatgaagtcttgtttaggtgccacttacca
aagcatttttctgccccaaatttaccagacctcaatagatcgcaggtttatgcagtaaaa
catgctgttcaacgtcctctttcattgattcaaggtcctccaggtacaggtaaaactgtg
acatctgccactattgtgtatcagcttgtcaagcagaatggtggacctgtactggtgtgt
gctccttctaatattgctgttgatcaacttactgaaaagatccatcgtacatcattgaag
gtggtcagagtttgtgccaagtcaagagaagcaattgattctcctgtctcatttctagct
ctccacaatcagataaggaacatggattgtaatactgagctacaaaagcttcagcagttg
aaagatgaaactggtgaattgtcatcagctgatgaaaaacgttacaggatattgaaaaaa
gctgcagagaaagagctgttagatgcagctgatgttatatgttgtacatgtgttggtgct
ggagatccaagattggccagactcaaatttcattctatactgattgatgaaagtatgcag
gctactgaaccagaatgtatggtgcctgtgatacttggtgccaaacagcttattctggtt
ggagatcactgtcaattgggcccagttgtgatgtgtaaaaaggcatctcgtgctggtctt
tcacaatctctatttgaacgtttggttgttcttggaattcgtccattccggttagaagta
cagtataggatgcatccagaattatcaagatttccatcaaatttcttctatgaaggatct
ttgcaaaatggagtatgtgcagatgaaaggaagcttgtaaagatggatttcccatggcct
gtggctgataaaccaatgctgttttacgttacccagggtcaggaagaaattgctggctca
ggtacatcttatttgaatcgtaccgaggcagcaaatgttgaaaaaattaccacaaggttt
cttcgttgtggtgtgaaaccagagcagataggtgtaattactccatatgaagggcaacga
gcttatcttgttcagtacatgcagtatcaaggtgcactacattctaaattgtatcaagag
attgaagttgccagtgttgatgcttttcaaggtcgagaaaaagatctaattataatgtca
tgtgtaagatccaatgagcaccaagggataggattcttaaatgatccacgacgtcttaat
gtagcattaactagagcaaagtatggaattatcattgttggaaatccaaaagttttatct
aagcaacctttgtggaatcatttactgaacttttataaggaacagaaagttttagtagaa
gggcctttaaataatctaaaggaatctatgatacagttctctaaaccgaaacaaattgtt
aacacagctaatccaggaacacattttatgtcaacgactgtttatgatgctcgtgaagca
atggtacctggttcaatatatgatagaactggtaacaataatgctccacctcattatttc
ccaagatctgcaggaactggtgctacgcttgatatgtttggaaggactcatgacccgatc
agttacatctcgcaagagagagctcaggctgctctttcaaacatggctgtaccagtgggt
atgtttatgaacatggcacatatacctccaaggttctataaccagcatcaacaagcccta
caagcacggcaaaatcagagaggcaatcgtaacattggaagcagtcggatgcggaataag
atgaactcaatggctggcaagaacaaagcaggaattggcttgagtcagaccaatagtcaa
gatgttacacaaccttacagtcaaggaatcactcaagggatgtctcagggtatgtcacag
cctggattaagtttgtcgcagcctggtttgagccaggctgagttatctcaggacagttac
atcgttggtgagtttcagtcccagatggatggactgttgtctcaggattctacataccaa
ggtgatagatatccgggccctgctgctcacttttctcagccgtactga
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integrated database retrieval system
