Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842: Ldb0358
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Entry
Ldb0358 CDS
T00364
Name
(GenBank) ATP-dependent helicase (DEAD/DEAH box family)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ldb
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Pathway
ldb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ldb0358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldb03019
]
Ldb0358
03009 Ribosome biogenesis [BR:
ldb03009
]
Ldb0358
Enzymes [BR:
ldb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ldb0358
Messenger RNA biogenesis [BR:
ldb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ldb0358
Ribosome biogenesis [BR:
ldb03009
]
Prokaryotic type
rRNA helicases
Ldb0358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAI97196
UniProt:
Q1GBP8
LinkDB
All DBs
Position
306525..307976
Genome browser
AA seq
483 aa
AA seq
DB search
MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL
QKLDLDKQEQAIQAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLKK
VPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTL
LFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVEN
PDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDV
AARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLT
KKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK
ELSNDSEVKVTITPENPHPYRGKHSGGRGRGSRSRSGNKNFKGKRNFDRKKRKPGFKIHG
RKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttactgaactaggattgaacgacaatatcttaaaggcaattaagcggtcaggc
tttgaagaagccaccccgatccaggcccagaccattcctttggctctggcaggccaggac
gtgatcggccaggcccaaaccgggacggggaagacagctgcctttggtctgccaatcctg
caaaagctggacctggacaagcaggagcaagccatccaggccatcgtaattgaaccaacc
agagaactggccatccagacccaggaagaacttttccgcctgggcagagacgaaaaggcc
aaggtccaggtcgtttacggcggggcggacattggccggcagatccgggacttgaagaag
gtgccggaaatcctggtcgggactcctggccggcttttggaccacttgaagcgcaagacc
atcaagctggacggcgtcaagacagttgttttggacgaagccgacgaaatgctggacatg
ggcttcatccaggatatcgaaagcatcttaacctatgctgaaaaccgggaccagaccctc
ttgttcagcgcgaccatgccaaagccaatccaggctttgggcgaaaagttcatgcatgac
ccgcaagtcgtgaagatccaggccaagcaactgacggctgatttgatcgaccagtacttc
gtccgcgtccgggaaaacgaaaagttcgacaccatgtgccggctgatcgacgtggaaaat
ccggacctggccgtggtctttggccggaccaagcgccgggttgacgaactgacccggggc
ctggttgcccggggctacaacgcggccggcatccacggcgacctgacccaggcccggcgg
atgcaggtgctcaagcgcttcaaggaaggagagcttgacattctggtggctactgacgtg
gctgcccggggcctggacatttccggggttacccatgtttacaactacgacattccgcaa
gacccggactcctacgtccacagaatcggtcggaccggccgggccggcaagagcgggatg
agcgtgaccttcgtgacgccaaacgagatcggctacatgcggactatcgaggacttgacc
aagaagaagatgtctcctctgcgtccgccgacagacgcccaggcctttgccgggcagatg
aagcaggcggtcttgaaggtggacgacctgttgagcggggatttgagcaagtatgacgac
gcggcggaaaagctgctggaaaattactcagctgaagacatcgccgctgctttgctgaag
gaactctctaacgacagcgaggtcaaggttaccatcacccctgaaaaccctcacccttac
cggggcaagcactcaggcggccgcggccggggtagccgcagccggagcggtaacaagaac
ttcaagggcaagcgcaattttgacagaaagaagcgcaagccaggctttaagatccacggc
cggaagggctaa
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integrated database retrieval system
