Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842: Ldb1309
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Entry
Ldb1309 CDS
T00364
Symbol
recJ
Name
(GenBank) RecJ, single-stranded DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ldb
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Pathway
ldb03410
Base excision repair
ldb03430
Mismatch repair
ldb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ldb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ldb1309 (recJ)
03430 Mismatch repair
Ldb1309 (recJ)
03440 Homologous recombination
Ldb1309 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ldb03400
]
Ldb1309 (recJ)
DNA repair and recombination proteins [BR:
ldb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ldb1309 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ldb1309 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ldb1309 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
DHHA1
RecJ_OB
DUF1631
OTCace
Motif
Other DBs
NCBI-ProteinID:
CAI98110
UniProt:
Q1G9R6
LinkDB
All DBs
Position
complement(1111569..1113845)
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AA seq
758 aa
AA seq
DB search
MKWQERTAAPLASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMHDM
DKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYGPS
LDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVHCN
YPGQAYPFDDYCGAGVAYTIARAVLEDTASEFLELAMIGTIGDMVKVSGEGHVIVKRGLE
MLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADASLAVRLLLAESPGE
AQELADQIEKLNNERKDLTQATMQAAEAQIKRRGYQKEATLTLYDPAWHEGVMGLVANKI
VEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKPFEGKSITQFGGHDFACGLSTTEE
NLNQLRRDFNQSYKAGEKAPEKVQEYDGTISPLDVDLTSVYDLAQAGPFGTDNPQPVFLL
DRPQISNFRPMRKGCSFMVGPVRAVDFDHGLNQTVLPYLRQMLVKLASNTFKGKTNVQFR
IVDLHYGQSLYAPAARIVDFRGQENLLGFADKYLLFDERNLSQAMNHFGITKEQISLAKD
NEDLSQQVVSVLDVPANEAQLNFVLAKPYRQLYLRFQLDQLPGETLPSRGNFGLVWQYFL
AHPGLKPNDYMQAAGQLGMDPDSIKFILRVFFTLDFVKMEEDRLLPKPSPTKKSLDDSAY
YRSVKAEYAFANKLRTISSDELIRYASGLANGGLQNVN
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcaagaaagaacagctgctcctttggccagtgacctggttgaggaatttcaa
cttagcccattaacggctaagttgttttctttgcggggaattgacaacgaggaaaaaatc
gactattggctccacgccagtgaaaatgacctggctgatccctttttgatgcatgacatg
gacaaggcagtcggccgaatcaaccaggccctggacgagggcgaaaagatcactatttac
ggggactatgacgctgacgggatcaccgccacggccataatgacggaaatgctgaccatc
atgggggctgatgtccattacttcattcctgaccgcttcaaggacggctatgggccaagt
ttagaccgctacaaggatattgtggcagacgggacgaaattgatcatcaccgttgacaat
ggggcaaccgggattgaagaagtggcatatgcgcagtctcacggcgtggacgtgatcgtt
accgaccaccacaccttcaaggaggaaaagcccgacgcttatgccctggtgcactgcaac
tacccaggccaggcttatccttttgacgactattgcggggccggggtagcttatactatt
gcccgggcagtcttagaagacacggccagcgaatttttggaactggccatgatcgggacc
attggggacatggtcaaagtttccggtgaagggcacgttatcgttaagcggggcttggag
atgctgaatgaaagctcccggccgggcctggaggctcttatccgcaatgccggccttacc
ccggggatgattgatgaagaagacgtcggctttagcatcgctccccgtttaaacgcctgc
ggccgcctggctgatgccagcctggccgtaaggctgcttttggcggaaagcccgggcgag
gcccaggaattagccgatcagattgaaaagctgaacaatgagcgaaaagacctaacccaa
gcgaccatgcaggcggctgaggctcaaattaagagacggggctaccagaaagaagcgaca
ttgaccctgtatgacccggcctggcatgaaggggtcatgggcttagtcgccaacaagatc
gtggaaaaataccacaagccaaccttgatgctgacgaaaaacgaggccggcctggtcaag
gggtctggccggtccagccagggcttcaacttgttcaatgccttgaagccttttgaaggc
aagtccatcacccagtttggcggccacgactttgcctgcggcctgtcgacgactgaggaa
aatctgaaccagctcaggcgtgactttaaccaaagctataaggcaggggagaaggctccg
gaaaaggtccaggaatatgatggcacgatcagtccattagatgttgatttgaccagcgtt
tatgacctggcccaggccgggccttttggcacggacaacccccagccggtctttttgctt
gacaggccgcagatctctaacttccgccctatgcggaagggctgcagtttcatggtgggc
ccggtcagagcggtggactttgaccacggcttaaaccaaactgtcctgccttatttgcgg
cagatgttggttaagcttgcttctaacacttttaaaggcaagaccaatgtccagttccgg
attgttgacctgcattacggccagtccttgtacgcgccagccgcccggattgtggacttt
cgcgggcaggagaatttgctgggttttgcggacaagtatctcttatttgatgagagaaat
ctcagccaggccatgaatcattttggcataactaaagagcagatttccctggccaaggac
aatgaagacctcagccagcaggtcgtgtcagttcttgacgtgccggccaatgaggcccag
ctgaactttgtcctggccaagccttaccgccagctctacctacgctttcagttggaccag
ctgccaggggagaccctgcccagccggggcaacttcggcctggtctggcagtacttttta
gcccacccgggactaaaaccgaatgattacatgcaggctgccggccagctggggatggat
ccggacagcatcaagtttattttgagggtgttttttacccttgattttgttaaaatggaa
gaggacagattgctccctaaaccgagtcctacaaagaagtctttggacgattcagcctat
taccggtcagtgaaagcagaatatgcctttgctaacaaattacgaacaatctcttcggat
gaattaattcgctatgccagtggtctagcaaatggaggattacaaaatgtcaattga
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integrated database retrieval system
