Leptinotarsa decemlineata (Colorado potato beetle): 111502570
Help
Entry
111502570 CDS
T07512
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc04512
ECM-receptor interaction
ldc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111502570
04518 Integrin signaling
111502570
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ldc00536
]
111502570
Glycosaminoglycan binding proteins [BR:
ldc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111502570
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
CFC
Motif
Other DBs
NCBI-GeneID:
111502570
NCBI-ProteinID:
XP_023012448
LinkDB
All DBs
Position
Unknown
AA seq
1544 aa
AA seq
DB search
MKYDRYIWVALVALTFLGTTSEARSRRKSKKVDAKPQSDDPEAAVVQNQQPNDNYDYGEV
DPDYTDYYSERESEGGSRSSPTSKPITTPQPLDERPREETTEIFVQPEDERPTAAPTGTV
DVRVIPPRPSPESNVVPFSCSQDGRFYQDNEKWTVEKCKECTCLNGNIECKTDEVCLGAL
RPTREPHVDVIPLPGPRGEHGYPGDPGRPGDPGASGTPGVPGVPGPPGPPGPAPDLSAYY
QQLAQTQGSGDKGPTFEPFQYLQAAVGPVGSRGPPGPAGPAGPQGFQGPRGETGETGQAG
IAGPPGPRGLPGLPGKDGERGDDGEPGVAGPPGPVGPRGLPGMPGLPGTKGHRGYSGMDG
SKGEQGAIGEKGSQGMPGQMGPVGPMGPVGPRGERGREGPPGLPGLRGIDGIAGPPGQPG
VIGKPGAPGFTGNPGMKGDQGAQGPKGSRGFEGPRGESGRPGQPGESGPPGPAGKDGYPG
EKGSIGATGLVGSPGFPGARGPPGLAGNPGQPGMKGAPGLPGDRGYKGDAGIRGETGAIG
PRGLPGLPGSEGKRGKRGMRGPSGQMGPQGERGLPGVRGLPGPDGAPGPKGQAGERGLLG
PVGPKGSQGEAGRPGQTGLQGMRGMSGRPGQPGKNGSPGERGMPGQDGKPGEQGPQGIQG
LPGPLGLPGDKGLTGEAGKDGEPGPPGPIGPRGDVGKDGPIGPTGPPGPAGIDGERGPPG
VDGPRGFQGLPGAPGNPGLPGKDGEPGIQGTAGIPGNQGIRGERGFPGERGPVGQPGLPG
IKGSPGSQGIDGPQGLPGPRGMKGHQGPQGLIGLPGLRGSQGSQGEKGERGSFGPIGPEG
PPGRQGERGPLGPIGPPGPPGEPAAPGEPGPPGFPGEPGAQGGPGERGPAGPQGSQGFPG
PPGLLGLPGVKGERGLSGMKGEQGNLGPVGRPGEPGPQGPIGLTGSKGARGEAGPRGDAG
IMGPPGRPGEPGQAGQPGHAGLPGPQGLPGIKGAAGETGRAGLPGLQGLTGAPGQDGPKG
DTGAEGPPGPIGPAGPQGPSGDRGLPGIPGLQGPSGMTGPRGSPGETGAPGKPGSEGPQG
PIGLSGPPGLPGPSGDQGPEGPTGKPGPPGISGRPGDKGPQGPPGQSGSTGSPGLPGPPG
PIGPTGLTGERGPRGESGPQGTDGAPGERGKPGAPGTEGAKGDRGELGPIGPKGHRGLMG
LQGLPGLQGQPGERGPPGEHGMPGKEGETGQRGPPGRDGSLGPQGVAGPPGPRGENGNDG
RPGPPGPAGPAGPPGPPGEGIGYDAASLAAFLSQGQNNQKGPDPMNDQPIRIFGKEITEE
ETRNIINKAYEQLKSSFDRLKKPNGQKNSPGKTCRDILAAYPESQSGQYWIDPNDGDIRD
SILVYCDMEKRATCVMPKPDRSPEIRYEGRDPEVWLGEIEHGMQITYKADSTQIGFLHLL
SSSATQNITYHCKKSAAYFDVTRHTFRKGIKLMSSNDVEITPKGKLRYEAISDECRYRKD
SWAETVISYSTNKPSRLPITDVGVRDIGEPDQAFWIEIGAACFS
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgaccgttatatttgggtggcgctagtagcgctcacctttctgggaaccacg
tcagaagctagatcgagaagaaaatcaaagaaagttgatgccaaaccacaatctgatgac
ccagaagccgctgtagttcaaaatcagcaaccaaatgacaattacgactatggagaagtc
gatcctgattatacagattactactcagaaagagagagtgaaggaggaagtagatcatca
ccaacatcaaaacccataactacacctcagcctcttgacgagagacctcgcgaagaaaca
acagaaattttcgtccaaccggaagatgaaagacctacagcagcaccaactggtactgtg
gatgttcgtgtcatcccacctagaccctctccggaaagtaacgtggtacctttctcttgc
agccaggatggaaggttttaccaggataatgaaaaatggaccgtagaaaaatgcaaggaa
tgtacttgtcttaatggaaacatagagtgtaagacggatgaggtctgcctaggagcgctg
agacctacgagggaaccacatgttgacgtaatacctcttccaggtccaagaggagaacat
ggttatcctggtgatccaggacgaccaggagatccaggagcatctggtactccaggagtt
cccggcgtaccaggtccacccggcccgcctggccccgcccctgacctcagcgcttattac
caacagctggcccaaacccaaggaagtggtgacaaaggaccaaccttcgaaccttttcag
tatcttcaagcagcggtggggcctgtgggatccagaggaccaccaggaccggcaggacca
gcaggaccccaaggttttcaaggacccagaggagaaactggggaaacaggacaagctgga
atagctggaccaccgggtccaaggggtttgcctggtctaccaggaaaggatggagaaaga
ggagacgatggagaaccaggcgtagctggacctcccggcccagttggtccaagaggcctg
cctggtatgccaggtctccctggaaccaaaggtcaccgaggttactccggaatggatggt
agtaaaggtgaacaaggagctatcggagagaaaggatcacagggtatgcctggacagatg
ggacctgttggtccaatgggtcctgttggacctagaggtgaaaggggtagagagggacca
cccggacttcctggcttgaggggaatcgacggaatagcaggaccaccaggacaaccgggt
gttattggaaaacctggagcacctggtttcactggaaaccctggtatgaaaggtgatcaa
ggagctcaaggacccaaaggaagtcgtggttttgaaggaccacgaggagagtcgggccgt
cctggacaacccggtgaatctggtccaccaggaccagcaggaaaagatggatatcccgga
gaaaaaggaagtattggcgcaacaggtctagttggatctcctggattcccaggagctaga
ggccctccaggtttagcaggaaatccaggacaacccggaatgaaaggtgcacctggtttg
cctggagacagaggttacaagggcgatgccggcataaggggtgagacaggagctattggg
cctagaggactaccaggactaccaggatctgaaggcaagcggggaaagagaggcatgcga
gggccttctggacaaatgggtccacagggagaacgaggattacctggtgttagaggacta
cctggtcctgatggagcacctggtcctaaaggtcaagctggagaaagaggattgttaggc
ccagttggtccgaaaggatcacaaggagaagctggacgtcctggtcaaacaggactacaa
ggaatgaggggaatgtcaggccggccgggacaacctggaaagaacggttcccctggagag
aggggaatgcctgggcaagatggaaaacctggcgaacaaggacctcaaggaattcaaggg
ttacctggtcctttaggtcttcctggagacaaaggattaactggtgaagcaggaaaagat
ggcgaaccagggccaccaggtccaataggaccaagaggggatgttgggaaagacggacca
attggaccgaccggacctccagggcctgctggtattgacggagaaaggggaccaccaggt
gttgatggaccacgaggttttcagggacttcctggggctccaggaaatccaggattgcca
ggaaaagacggcgaacctggcatccaaggaacagcaggaattccaggaaatcaaggtatc
aggggtgaaagaggctttccaggcgaaagaggtccagttggacaaccaggattacccggg
atcaaaggatctcctgggtctcaaggaatagatggcccgcagggacttcctgggcccaga
ggaatgaaagggcaccaaggtccacaaggtttgataggactaccaggtttaaggggttct
caaggttctcagggtgaaaaaggagaacggggctcatttggtccaatcggtcccgaaggt
ccaccgggacgtcaaggagaaagaggacctcttggacccataggaccacctgggcctcca
ggggaaccagcagcaccaggtgaacccggacctccgggttttccaggagaaccaggagca
caaggcggaccaggagagagaggaccagcaggaccacagggatcgcaaggttttcccgga
cctccaggtcttctcggattgccgggagtaaaaggagaaagagggttatctggaatgaaa
ggtgaacaaggaaatttgggacctgttgggagacccggagaacctggacctcaaggacca
attgggttaactggttcgaagggagcaagaggagaagctggacctagaggagacgcaggt
ataatgggaccaccaggaaggccaggagaacctgggcaagcgggtcaaccaggacatgca
ggattgcctgggcctcaaggacttccaggaataaagggagccgctggagaaactggaagg
gctggtcttcctggacttcaaggactcactggagcaccaggacaagatggacccaaagga
gacaccggagcagaaggacctccaggtcctataggtcctgccggtccacaaggcccatca
ggagatagaggtttgccgggaattcctggtttacaagggccgagcggtatgacaggacct
agaggatctcccggtgaaactggtgcccccggaaaacctgggagtgaagggccccaaggt
cctattggtttgagtggacctccaggattacctggacctagcggagatcaaggaccagaa
ggacctactggtaagcctggaccaccgggtatttcaggaagacctggtgataaaggacca
caaggacctcctggacagtctggcagtactggatctccaggactgccgggcccaccagga
ccaatcggtccaaccggtctcacaggagaaagaggaccccgaggagaatcaggtcctcaa
ggaaccgatggcgcacccggagaaagaggaaaacctggagctccaggcacagaaggtgct
aaaggagatcgtggagaattaggtcctattgggccaaagggacatcgcggtttgatgggt
cttcaaggactacccggtttgcaaggacaacccggagaaaggggaccacctggtgaacat
ggcatgcctggaaaagaaggtgaaactgggcagagaggacctcccggaagagatggtagc
ctgggacctcaaggagtagcaggaccaccaggacctagaggagaaaatggaaatgatgga
agaccaggaccacctggtccagctggacccgcaggaccacctggtcctccaggagaaggg
ataggatacgatgctgctagcctggcagcattcttgtcccaaggacagaataatcagaaa
ggacctgatccaatgaacgaccaacccatcagaatattcggaaaagaaattactgaagag
gaaactcgcaatataataaacaaagcttatgaacagctcaaatcttcttttgacagactg
aagaaaccaaacggccagaagaactcgcctggaaaaacttgcagggacatattagctgct
tatccagaatcacaaagtggtcaatattggattgatccaaatgatggagatatcagagac
tcaatcctagtttactgtgatatggaaaaaagggcaacctgcgttatgcccaaaccagat
cgctcaccagaaattcgttatgaaggcagggatcctgaagtttggctaggagaaatagaa
cacggaatgcagattacatacaaggcagacagcacccaaattggtttcttgcaccttctg
tcatccagtgcgacacaaaatatcacttaccactgcaaaaagtcagcagcctactttgac
gttacgagacatactttccgcaaaggtatcaaactgatgagttccaacgatgtagaaata
acaccgaaaggaaaacttcgatacgaagctatctcagatgaatgcaggtatcgcaaagac
tcttgggctgaaacagtgatctcctactcaacgaacaagccatctaggttacccattacc
gacgtgggtgtaagagatataggagaaccagatcaagctttctggatagaaatcggagca
gcttgtttctcatag
DBGET
integrated database retrieval system
