Leptinotarsa decemlineata (Colorado potato beetle): 111506259
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Entry
111506259 CDS
T07512
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111506259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldc03019
]
111506259
03041 Spliceosome [BR:
ldc03041
]
111506259
Messenger RNA biogenesis [BR:
ldc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111506259
Spliceosome [BR:
ldc03041
]
Complex B
Other components
Prp19-related factors
111506259
Complex C
111506259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
Suf
TPR_8
TPR_2
TPR_12
TPR_15
TPR_10
RPN7
Mad3_BUB1_I
PPR
ARM_TT21_C
TPR_7
ARM_TT21
NRDE-2
DHR-2_Lobe_A
TPR_1
Motif
Other DBs
NCBI-GeneID:
111506259
NCBI-ProteinID:
XP_023017049
LinkDB
All DBs
Position
Unknown
AA seq
833 aa
AA seq
DB search
MVQQSEHIEIKFSDDDLPYEEEILRNPYSVKHWLRYVEHKKAAPKGVNIVYERALRQLPG
SYKVWYKYLRTRRMQVKSRCIIDPEYEEVNNAFERALVFMHKMPRIWMDYCTFLTDQCKI
TRTRNVFDRALRALPVTQHNRIWPLYLKFVKQHDIPETAVRVFRRYWKLCPENAEEYVDY
LTEIGRLDEAAQVLAKIVNDENFASQKGKSKHQLWNELCELISKNPDKIRSLNVDAIIRG
GLRRYTDQLGHLWNSLANYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDSYAQFEELS
LSKKMEEVANQANPTEDDDTDLEMRLSRFENLMERRLLLLNSVLLRQNPHNVQEWHKRVQ
LYEDKPLEIINTYTEAVQTVDPKLAVGKLHTLWVDFAKFYEKNGQIDDARLIFEKATQVP
YVKVDDLANVWCEWAEMEIRNENYDEALQLMHRATVMPSRKVAYHDDSETVQSRVYKSLK
VWSMYADLEESFGTFKSCKAIYDRIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKGI
SLFKWPNVYDIWNTYLTKFLKRYGGTKLERARDLFEQCLEGCPPQFAKHLYLLYAKLEEE
HGMARHAMAVYERSTKAVPEGEMFEIFNIYIKRAAEIYGIPKTRQIYEKAIEVLPEDKTR
DMCIRFADMETKLGEIDRARAIYAHCSQICDPRITNEFWQIWKEFEVRHGNEDTMREMLR
IKRSVQAMFNTQVNMMSAQMLSTAASMSGTVADLAPGVKDGMRLLEAKAVEMSGINFVRG
ETQGDKKDKVVNPDEIDIDDEDEEEEIPVEKQSIPSEVFGSLRVQVPVEEDDQ
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaacaatccgaacacatagaaataaaattcagtgatgatgacttgccttatgaa
gaagagattcttcgcaacccgtattcagtcaagcactggttgcgatatgttgaacacaaa
aaggcagctcccaaaggagtcaacatcgtatacgaaagagccctgaggcaactgccaggt
tcttacaaggtatggtataaatatctacgaactaggagaatgcaagtcaaatctcggtgc
ataatagaccccgaatatgaagaggtaaataatgcattcgaaagggccctagtgttcatg
cacaagatgcctcgaatctggatggactactgcacattccttaccgatcagtgtaaaata
acaagaaccagaaatgtgttcgacagagctttgagagcgttacccgtaacacaacataat
aggatttggcctttgtacttgaaatttgtaaagcagcatgatattcctgagactgctgtc
cgggtattcaggaggtactggaaactgtgtccagaaaatgctgaggaatatgtggactac
ctcacagaaataggtcggcttgacgaagctgcccaagtattggcaaaaattgtcaatgat
gaaaattttgcttcccagaaaggaaaatccaagcatcaactctggaacgagctttgcgaa
ctcatatcaaaaaatcctgacaagattcgttccttaaatgtggatgctatcatcagagga
ggcctgagacgctatactgatcaactgggccacctctggaactccttagcaaactactat
gtacgcagtggcctgtttgaaagagcaagagatatttatgaggaagctattcaaacagtc
actaccgttcgtgatttcacccaagtttttgattcttacgcacagtttgaggaattgagt
ctcagcaagaaaatggaagaggttgctaatcaggctaatcctacagaagatgatgataca
gatctggaaatgaggctatccaggtttgaaaatctcatggaaaggagattactgttgctt
aactccgtacttctgagacagaacccgcataacgtccaagaatggcataaaagggtccaa
ctgtatgaagataaaccactggaaataatcaacacttacacagaagcagtgcaaactgtg
gatccaaaactagctgtgggtaaacttcacaccttatgggtggatttcgcaaaattctat
gagaaaaacgggcagattgatgatgccaggcttattttcgaaaaggccacacaagttcca
tatgtgaaagtagatgatttggcgaatgtttggtgtgaatgggctgaaatggaaatccga
aatgaaaattatgatgaagctttgcaacttatgcatagagcaacagttatgcctagtcga
aaagtggcctatcatgatgactcagaaacggtgcaaagtagggtctataaatcgctgaaa
gtgtggtccatgtatgctgatttagaagaaagtttcggtacatttaaatcttgcaaagct
atctatgatcgcataatagatttgaaaatcgccacacctcagatcatcatcaactacgga
ttatttttggaagaaaataactactttgaggaagcgttcagggcttacgaaaaaggcatc
tctcttttcaagtggccaaatgtttacgacatttggaatacttatctcaccaagttcctc
aaacgatatggaggtactaaacttgaacgagccagggatcttttcgagcagtgtttagag
gggtgtcctcctcagttcgcgaaacatctctaccttctctacgccaagctggaagaagag
catggaatggctagacatgcgatggctgtttacgaaaggtctaccaaagctgtgcctgaa
ggagaaatgttcgaaatattcaatatatacataaagagagcggcagaaatctatggtatc
ccaaaaactaggcaaatttatgaaaaggcgattgaggtgctaccagaagataaaacgagg
gatatgtgcattaggtttgctgatatggagacaaaattaggtgaaatagacagagccaga
gctatctatgctcattgcagccaaatttgcgatccgcgtataacaaacgaattctggcag
atttggaaggagttcgaagtacgacacggcaacgaagacaccatgcgcgagatgctgagg
ataaagcgtagtgtccaggcaatgttcaacacccaggttaacatgatgtcggcgcagatg
ctgagtacagctgccagtatgtctgggactgtcgcagatctggcacctggtgtcaaagat
ggaatgcgattgctggaagccaaagcagtcgaaatgtctggaataaactttgtcagggga
gaaacccagggagataaaaaagacaaagttgtcaatcctgatgagattgatatcgatgat
gaagatgaagaagaggagatacctgtggaaaaacaaagtattccctccgaggtatttgga
agtttgcgggtgcaggtacctgtagaggaagatgaccagtga
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