Leptinotarsa decemlineata (Colorado potato beetle): 111510263
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Entry
111510263 CDS
T07512
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111510263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldc03019
]
111510263
Enzymes [BR:
ldc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111510263
Messenger RNA biogenesis [BR:
ldc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111510263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111510263
NCBI-ProteinID:
XP_023021944
LinkDB
All DBs
Position
Unknown
AA seq
540 aa
AA seq
DB search
MCRTDINIINFKEKFPEIKRSLEDARFISFDLEFSALYPLKEYSPSIFDTPSERYRKLRK
IMEHVVPIQIGITAFTCDLTDNCFRGKIYNFYLLPPSFPTIHKNFLFDPGAVKFLAFHGF
DFNQFASVGLPFLSSPEEETLRKKLKQGTITNDVAESKLELNSLFFEVRKKVREWYKVAK
HGDKLSLPEIYDKFWNSYEMLYFIHKRFRCKFSKVWTFVDEKNKDFVLQKLTVEECAKLE
ASQNLEEELISQLLGFTRVFRLLASLKKPIVGHNCFQDLFLMVHSFDSPLPSSYSCFKKR
MNQLFPVIFDTKHISRAIKLEVPLRKRWHDKGLDFLYRFFSQDVGRFLVYDVPKLEHANN
GYVEKYHEAGWDSYCTGYIFLCMAFWALNRNYSGLRPFVSPHLIQALEEFKNKINVIRCS
VHCVKLDGDDPKPIKPPFLVLQSNIKRNLSIYQVSNMLSGLGFFEIRTFPFHRGRYLIAT
DNDQTARKIHEEFLGDEEFTITEYSWWEHSAGANVCKFTGVVATSFLLVLVADTLITKYR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagaacagatataaacattataaattttaaggaaaaatttcccgaaataaagaga
tcattggaagatgctaggttcatcagtttcgatttagaatttagtgccttgtatcctcta
aaagagtactctcccagtatttttgacaccccttcggaaagataccgcaagttacgaaaa
attatggaacatgtcgtacccatacaaattggaattacagctttcacctgtgatcttaca
gataactgcttccggggcaaaatttacaatttttacctcctaccgccatcattcccaacg
attcacaaaaattttctgttcgaccctggcgctgtaaaatttttagcattccatggtttc
gattttaatcagtttgcatccgtaggtttacccttcttgagcagtcctgaagaagaaacc
ctcaggaaaaagttgaagcagggtaccatcacaaacgatgtggctgaatcgaaattggaa
ttgaactcgctcttctttgaagtacgcaaaaaagtgagagaatggtacaaggttgcaaaa
cacggagacaaactttctctgcctgagatatacgataaattttggaacagttatgaaatg
ctttatttcatacataaacgcttcaggtgcaaattttcgaaggtgtggacttttgtagat
gagaagaacaaagattttgttttacagaaactcactgtcgaagagtgtgcaaagctggag
gcatcgcaaaacttggaagaggagcttatctcccagcttttaggcttcacgcgggtcttt
cgacttttagcgtcccttaagaaaccaattgtgggacataattgcttccaagatttattt
ctgatggtccacagcttcgacagcccattgccttcctcttacagttgttttaaaaaacgt
atgaaccaactttttcccgttattttcgatacgaaacatatctctcgtgcaataaaattg
gaagttcctcttcgtaagagatggcatgacaaaggtttggacttcctttaccggtttttc
agccaagacgtgggacggtttttggtgtacgatgtacctaaattagagcacgcgaacaac
ggctatgttgaaaagtaccatgaagctggttgggactcgtactgtacagggtatattttt
ttgtgtatggcattttgggcgttgaacagaaactactctgggttgagaccgtttgtgagc
ccccatcttattcaggccctcgaagaattcaagaacaagataaatgttattaggtgttct
gttcattgtgtaaaacttgatggtgatgatcctaaacccattaagcctccatttttggtc
ctgcaatccaacatcaagcgcaatttaagcatatatcaggtgtcaaacatgttgagcgga
ctaggattttttgaaattcgtacgtttccattccacagaggaagatatttgattgccacc
gataatgaccaaaccgccagaaaaattcacgaagaatttctaggcgacgaagaatttaca
ataacggagtacagctggtgggagcattcagccggagccaacgtttgcaaatttaccggc
gttgtggcaactagttttcttctagtattggtagcggatacattaataaccaagtatagg
tga
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