Leptinotarsa decemlineata (Colorado potato beetle): 111512617
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Entry
111512617 CDS
T07512
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111512617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ldc03021
]
111512617
03019 Messenger RNA biogenesis [BR:
ldc03019
]
111512617
Transcription machinery [BR:
ldc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111512617
Messenger RNA biogenesis [BR:
ldc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111512617
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pcf11_C
zf_PCFS4
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
111512617
NCBI-ProteinID:
XP_023024528
LinkDB
All DBs
Position
Unknown
AA seq
1592 aa
AA seq
DB search
MSTPEEIKAEYASSLADLTFNSKPLINVLTMLADENSPNAKVIVEAIETHLSKVSTDVKL
PILYLIDCIVKNVGGTYTSLFSQNIVSTFCGVFKATLTPDIYCDTYQNNKFKVDEKTRAE
MFKLRQTWNEVFPQMKLYAIDVQINLLDPAWPVTAQPPSNSIHFNPKFLKKTTSPKPKSE
PEPPKIVGTVQPNINKETLLMQEQLIQKQKELLELQQKKLELEVLQTQVKLQEQIKHNPA
VPGKSILLKPEVAKQLVPSLGKNRPVGIGVATATQQQRLQVTNNSTRINPVNRDLIDAAS
RPLIRDPRLLRQQQKSSNNNSGVQLGQRTAFLENNKIVTNKVGGRKTRTDPRLLNKDDVP
PQKTDTTKPANLPKSHKSHKTSRAGSRSTDSDSSSLKSSSSGSLDSPSKPKSDTVKSAAK
HRKKERSDEKKLSPTKEPKHKSEISSFKGVKSTVKNRNSVRRHIGSPTPDVPQDEDLRSF
GPPEKQPRLQCEPPEEKNSNVVSTSKGLDVDFRHLPPPAIITKKRTSSEASPDQHSAKKS
KSEVFDKLFGDEDTDLRQLPITAEHQPVTSTEQQQPVITEQRPPTPPPPIISSSESPTDS
PKSESPKSNLDAIRAKLANATNRDKILSKSFNKKRLRALEDQDLRVPKVSSTTDSPRKII
ISPEDEKIIKLGNLTKEQENLLLNKIIMQMEKNKLKEAKKKDKEESFNISLQPISDEEFI
SSDEEKGRVDKGQQEKSEPDLKPEPNKMKPIAEESLIPFNDKDERLNVGPMPPQGDFMPG
PFFPRDGREMRRFPGPPNWRGARGGRRFWENPPRMPVRPWNQPAPWRNLPPHQQQRDYPP
QQFPQPTDFPPAPEEELPVSSDIELKDHLPSGVVNEDEIKTIVIDGVPKDIRFYGELGIT
FISWDDPRELTFQDDGVRQITFNDKECYVFALNHPYKEVLINGSLHKVKIGAPSREIFID
QVPYECFFGSVIRIDLNGVSTTLKLEGPPPPVKIGDTKRTDLVAGKINVCIDAKVVVPVF
LDAKVQKFVLEGETHTLKFVNALETVLINDVPFNVEYGGLPKPIVINGKKHFIRFSVLPK
GIKPGRVNIRDMEGKGNISPKFDENSQDSNPDIDAYDPALPIMGKITISKGADSPDRNSN
SPNFYRNLLQQQSLNNLERLSNAMTPTLAPLPTAGAYQVENQSNLDVPKNETTTSKPTPV
ININDLFQKLVASGFVTSTDQKKPTVSQELMKENPPSLNKETPVEKPIVKPISGPTVSKL
KRNTCENLRPITFEKPESLRIRQNVLYLTLYSGMQCSSCGMRFSPEASMQYSQHLDWHFR
QNRRGKRNYRVANSRRWYYSLSDWKNYEELEDLEEREKNYFDQQQQQADNVGEEAEEDTV
IPSVSADPESTDECCDVCRDKFDQFFNEEKEEWHLRNAIRIEDKTYHPLCYEDYQQSLLD
QTGDESKIQSPEPAKQEETTIPGLEIIIDVDDEDEDNNEVDTEPTEVVSLESDESKQVED
ENDKTEQPLGEGGDDDNDDVILNEVAPIKIVVDDDDEEMGEDSIESETKGIVKVKRESLD
DGFVEVSGLVSLQNGKQIKIKAEPVDLGEFII
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaccagaggaaatcaaggcggaatacgcatccagcttggctgacttaactttc
aacagcaagcccctcataaatgtactcaccatgttggctgatgagaattctccaaatgca
aaagttattgtggaagccatcgaaacgcatctgtcaaaggtctccacagatgtcaaactt
cctatcctgtatctcatcgattgtatcgtcaagaatgttggaggaacttatacttcttta
ttcagtcagaatattgtgtctaccttttgtggagtatttaaagcaaccttgacccctgac
atttattgtgatacttaccaaaacaataaattcaaggtggacgaaaagacgagagcggag
atgtttaaattgcgacagacgtggaatgaagtatttcctcaaatgaagctctatgcaata
gatgtccaaattaacctcctcgaccctgcttggcctgttactgcacaaccgccttcaaat
agcattcacttcaacccaaaatttttaaaaaagacgacttctccaaaaccaaaatcagaa
cctgaaccaccaaaaattgtgggaacagttcagccgaacattaacaaggaaactctactg
atgcaggaacaattaatacagaaacaaaaggagcttcttgaactgcaacaaaaaaagcta
gagctcgaagtattgcagacccaagtaaaattacaggagcaaatcaaacacaatccggcc
gtaccaggaaagagtatacttctcaaaccagaagtggcgaaacagctcgttccttcgcta
gggaaaaatagaccggttggaatcggtgtagcaactgcaacacagcagcaaagattgcag
gttacaaacaacagtactcgaataaatcctgtaaatagggatctgatcgatgcagcatct
cggcctctcatcagggatcctagacttctcagacaacagcaaaagtcgtcgaataataac
tcaggtgttcagttagggcaaaggactgcatttttagagaataataaaattgttacaaat
aaagtgggcggtcgaaaaactcgaaccgatccacggttgctcaataaagatgatgtccca
ccccaaaaaactgataccactaaacccgctaacctcccaaaatcccacaaatcgcacaaa
acatcacgagccggatccagatcaaccgactctgattctagttctcttaagtctagttct
agtggcagtttagattctcccagtaaacctaaaagtgacacagtgaaatctgctgcaaag
cacagaaaaaaagagaggagtgatgagaaaaaactgagtccgaccaaggagccaaaacat
aaaagtgaaatttctagttttaagggtgttaaatctactgtgaaaaatcgtaactctgtt
agacgccatattggatctccaacgcccgacgttccacaggacgaggatctgcgatctttc
gggccgcctgaaaagcaaccgcgcttgcagtgcgagccgccagaggaaaaaaattccaat
gtggtttcaacatcgaaaggtttggatgttgattttcgtcatttaccacctccagctatt
atcactaaaaaaagaacatcttctgaagcatctcctgaccagcacagcgccaaaaaaagt
aaatcggaagtttttgacaagttatttggagacgaggatacggatctaaggcagctgccc
attactgcagagcaccaaccagttactagcacggaacaacaacaacctgttattacggaa
caacgtccccctactccacctccacctatcatatcttcaagtgagagtcctacagatagc
cctaaatcagaatcgcccaaaagtaatttggatgccattagagctaaactggcgaatgct
acaaacagagacaaaatactttctaaatcattcaataaaaagcgacttagagctttggaa
gatcaagatctgagagttccaaaagtatcctcaacaactgactcacctcggaaaataata
atttctcctgaagatgagaaaatcatcaagcttggcaacctcaccaaagagcaggagaac
ctccttctcaacaaaataattatgcaaatggagaaaaataaattgaaagaggccaagaaa
aaagacaaagaggaatcattcaacatatctttgcaaccaataagtgatgaggaatttatt
agtagtgacgaagagaaaggacgtgtagataaggggcagcaagaaaaatctgaaccggat
ctcaaaccagaaccaaacaaaatgaagcctattgcagaggaaagcttgatacctttcaac
gacaaagatgaaaggttgaacgtcggaccgatgccaccacaaggggatttcatgcccggt
cctttcttcccaagagatggtagagaaatgagaagatttcctggtcctcctaattggaga
ggtgctcgaggcggtcgacgtttttgggaaaatccaccaaggatgcctgtcaggccatgg
aatcaaccagccccatggagaaatttgcctcctcatcaacagcaaagggactatcctcca
cagcagtttccacagcctacagatttccctccggcaccagaagaggaacttccagtttct
tccgacattgagctgaaagatcatttacccagcggagttgtcaacgaggatgagatcaag
actattgtcattgatggcgttccgaaggatattcgattctatggcgagttgggtatcacg
ttcatcagctgggatgatcccagggagttgacgttccaggatgatggtgtacgacagatc
acattcaacgataaagagtgttatgtgtttgctttgaaccatccgtacaaagaggttcta
atcaatggaagtcttcataaggtaaagattggtgctcccagcagggagatcttcatcgat
caggtgccttatgaatgcttctttggtagtgttattcgtattgacttaaacggagtcagt
acaaccttgaagctggaaggaccgccacctccagtgaaaattggtgacacgaaaagaaca
gatctagttgctggcaaaattaatgtatgcatagacgctaaggttgttgtacccgtgttt
ctagatgctaaagttcaaaagtttgttcttgagggtgaaacgcacactttgaaatttgta
aatgcgttggaaacagttttaataaatgatgtaccttttaatgttgaatatggtggtctc
cctaaacctattgtaataaatggtaaaaaacattttataagattttcagtcttgcctaaa
ggtataaaacccggtagggtgaatatcagggatatggagggcaagggcaacataagccct
aagttcgacgagaacagtcaagacagcaatcctgatatcgatgcctacgatccagctctg
ccaatcatgggaaagataacaatctcaaagggggccgactcgcctgataggaattcaaat
tctcctaacttctataggaacctcttgcagcaacaaagtttgaataatttagaacgactg
tccaatgctatgacacctacattggctcccctccctacagctggagcttatcaggttgaa
aaccaatcgaatctggatgttccaaagaatgaaactacaacttccaaaccaactccagtt
ataaatatcaatgacttgtttcagaaactagtagcctctggttttgttacttctacagac
cagaaaaaaccaacagtttcccaggaacttatgaaggaaaatccacctagtttaaacaaa
gaaactcctgttgaaaaaccaatagtgaaacctatttctggtccaacggtctctaaactc
aagagaaatacctgtgagaatcttaggccaattacatttgaaaagccggagtcactcagg
attcgacagaatgttctctatttaactctgtattccggaatgcagtgtagcagttgtgga
atgagattttcacctgaggctagtatgcagtatagtcagcacttggactggcatttccgg
caaaatcgaagaggaaagaggaattaccgtgttgcaaatagccgaaggtggtactattcc
ttgtctgattggaagaattacgaagaactagaagatttggaagaaagagagaaaaattac
tttgatcagcaacagcagcaagctgataatgttggagaggaggcagaagaagacaccgtc
attcccagtgtttctgccgatcctgaatcaacagatgaatgttgcgatgtttgtcgagat
aaatttgatcagtttttcaatgaagaaaaggaagagtggcacctgagaaacgccatcagg
atagaagacaaaacataccatcctctctgttacgaggactatcagcaatctcttttggac
caaacgggagatgagagtaaaatccaatcacccgaaccagctaaacaagaggaaacaact
attccaggccttgaaataataatagatgttgatgatgaggatgaagacaataatgaggta
gacacggaaccaacggaggtggtatccttggaaagtgatgaatccaaacaagtcgaggac
gaaaatgataagactgagcaaccccttggagaaggaggggatgatgataatgacgacgtc
attcttaatgaggttgccccgataaagattgtagttgatgatgatgatgaagaaatgggc
gaagatagtatcgaatctgaaacgaagggcatcgttaaagttaaaagagaaagtttggat
gatggatttgtcgaggtgtcaggtcttgtaagtctacagaatggaaaacaaataaagata
aaagcagagcctgtagatttaggtgagtttataatttaa
DBGET
integrated database retrieval system
