Leptinotarsa decemlineata (Colorado potato beetle): 111513244
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Entry
111513244 CDS
T07512
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ldc03016
]
111513244
Enzymes [BR:
ldc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111513244
Transfer RNA biogenesis [BR:
ldc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111513244
Prokaryotic type
tRNA splicing ligases
111513244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
111513244
NCBI-ProteinID:
XP_023025181
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQQELEYLEKISPYSWKIKKGFQPNMNVEGIFYVNQTLEKLMLDELRNACRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDNPDSIVSPGGVGFD
INCGVRLLRTNLFEQDVMPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSVRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIT
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKKFGLAPDDLDMHVIYDVSHNIAKVE
EHIVDGKPKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
LETFGSTCHGAGRALSRAKSRRNLDYTSVLRKMEYMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgagacaataccaacaagaacttgagtatttggaaaaaatctctccatattcc
tggaaaataaaaaaaggttttcaacctaatatgaatgtggaaggaatattttatgtgaac
caaactttagaaaagttgatgttggatgagcttagaaacgcttgtcgtcccgggatggtc
ggtggctttctacctggagtgaaacaaatagccaatgtagctgctctgccaggaattgtg
ggtaggtcagttggccttccagatgttcattctggatatggttttgccattggtaacatg
gcagctttcgacatggataaccctgactcaatagtgtccccagggggagtagggtttgat
atcaattgtggagttagattattacgcacaaatctctttgaacaagatgtcatgcctgtc
aaggaacagctagctcagagccttttcgatcatattcctgttggtgttggttccaaagga
atcattcctatgaacgctagggatctagaagaggcattagaaatgggtatggactggtca
ctgcgagaaggttatatatgggcagaagataaagaacattgtgaagaatatggtagaatg
ttgaatgctgatccatctaaagtcagcgtgagagctaaaaaaagaggattgcctcagctg
ggaactttaggggctggaaaccactatgctgaaattcaagtagttgatgaaatatatgac
aaatgggctgcttctaaaatgggcattgaagagaaaggccaggtctgtgttatgattcat
tctggtagtagaggatttggtcaccaggttgctaccgatgcactcgttcagatggaaaaa
gcaatgaagagagacaatattgaaacgaatgataggcagttggcttgtgcgagaataacc
agccaagaaggacaagattatttgaaatctatggcggcggctgcaaattttgcatgggtc
aatagaagttcaatgacattccttagcagacaggcctttgcgaaaaaatttggtttggct
ccagacgatctagacatgcatgtgatttatgacgtgtctcataacatagccaaagtagaa
gagcatattgtggatgggaaacctaaaaccctcttggttcacagaaagggttctacaaga
gcatttcctccacaccatccacttataccagttgactatcagctaacgggacaacctgtg
ctcattggaggaactatgggtacgtgcagttatgtattgacaggtacagaacaaggaatg
ttggaaacatttggatctacttgtcacggagctggccgggcattatcaagagcgaaatct
aggagaaacttagactataccagtgtcctgaggaaaatggagtatatgggaatctcaatc
cgagttgcatcacccaaattagtcatggaggaggctcccgagtcgtataaaaatgttact
gatgtagtaaatacctgtcatgcagctggaatttcaaaaaagtgtatcaaactgcgacca
attgctgtgatcaagggctaa
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