Leptinotarsa decemlineata (Colorado potato beetle): 111516663
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Entry
111516663 CDS
T07512
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111516663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldc03019
]
111516663
Enzymes [BR:
ldc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111516663
Messenger RNA biogenesis [BR:
ldc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111516663
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Bcr-Abl_Oligo
Motif
Other DBs
NCBI-GeneID:
111516663
NCBI-ProteinID:
XP_023028571
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MEITNSNFHSVLPDVEKAIENCSFLSIDCELTGLYSVRNINSFDTPCDYYEKMRNNSKDF
LVIQYGLSTFRYSEEDQNFKQQTYNFYIFRRPLNRNIPDQRFLCQSSSIDFLISEGMDFN
KLFREGISYLNENEKSKYEANLEEAHKKKSETIQSQKDGNDDNIPIPDNARPFMTDVAEQ
IELFLQGDQTELQLPKCNAFLRKLVYQMKKEKFDKKIFLETRQIEKDRILVVKRAMSLEE
ERENHEKNYESQLKELDDFIGFTKVLKAIVKSEKLVIGHNLLLDFLHSINQFLVPLPDDY
EEFKEMAHNLFPRVIDTKYMSSSAPFDDLISSSVLNQVLDRVSEEPFQIPDIVIEDGGQG
YKVSDKKEHEAGYDAFITGVSFLSMWKYLGVRNNLKDSEIFGNMDLLEPYLNKIFLMFLT
DNQYLHLAGEDLRVSRDHVFHLTFPKDWKLNNILQLFSPFGNVHVSWIDDTSAYVGLAKR
DQAALAFKTLSQSDSYSIMLYDRRRAILSGISTPLCSPKIGKKKKIIRKSS
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaaataacaaattcaaattttcattcagtattacctgatgtggaaaaagccattgaa
aattgttcatttttgagtatagactgtgagttaactggcttgtattcagttcgcaatata
aactcattcgatacgccatgtgactattatgaaaaaatgcgaaataactccaaggatttt
ttggtaatacaatatggactcagtactttcagatatagtgaggaagaccagaatttcaag
caacaaacctacaatttttatattttcagaagacctctgaacagaaatatcccagatcaa
agatttttgtgtcaatcttctagtatagactttttaatctctgaagggatggattttaat
aaattattcagggaaggtatttcatatcttaatgaaaatgagaagtctaagtatgaagct
aatttggaagaggctcataaaaaaaaatcagaaacaattcagtcgcaaaaagatggaaat
gatgataatattccaataccagacaatgcaaggccattcatgacagatgttgcagagcag
atagaattatttttacaaggggatcaaaccgaattgcaacttcctaaatgtaatgcattt
ttgagaaaattggtgtatcaaatgaaaaaggaaaaatttgacaaaaaaatatttttggaa
accagacaaattgagaaggataggattttggttgtaaaaagagccatgagcctggaagag
gagagagaaaatcatgagaaaaactatgaaagtcaactgaaagaacttgacgatttcata
ggtttcacaaaagtattgaaagcaattgtaaagtctgagaaacttgttattggtcataat
ttattgttggacttccttcatagtataaatcagtttttagtacctttaccagatgattac
gaagaatttaaagaaatggctcataatctttttccaagggtgatagatacaaagtatatg
tctagttcagctccatttgatgatctaatatcttcaagtgtattgaaccaagttttggat
agagtttcagaagaacctttccaaattccagacatagtgattgaagatggtggccaggga
tataaagtctctgataagaaggaacacgaagctggttatgatgcttttataacaggagtc
agttttttgtctatgtggaaatatttaggggtgagaaacaacttgaaagatagtgaaatt
tttggcaatatggatctcctggagccttatttgaataaaattttcttgatgtttttaact
gataatcagtacttacatttggcaggggaagatttgagagtatccagagatcatgttttt
catttaacttttcctaaagattggaaattaaataatattttacaattatttagtccattt
ggcaatgttcatgtatcttggatcgatgacacttctgcctatgttgggttggccaagcga
gatcaagctgcattagcattcaaaaccctatctcaaagtgattcttacagtattatgctg
tatgatagaagaagagctatcttatctggaatatcaacacctttatgttcccctaaaata
ggcaaaaaaaagaagatcatcagaaagtcttcctag
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