Leptinotarsa decemlineata (Colorado potato beetle): 111517414
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Entry
111517414 CDS
T07512
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ldc
Leptinotarsa decemlineata (Colorado potato beetle)
Pathway
ldc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111517414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ldc03041
]
111517414
Enzymes [BR:
ldc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111517414
Spliceosome [BR:
ldc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111517414
Complex B
111517414
Complex C
U2 SnRNP specific factors
111517414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Mad3_BUB1_I
DUF6801
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111517414
NCBI-ProteinID:
XP_023029336
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MAFNYANIHSNNTKRHNAVPPPSSGVSKQGYSTMNAISQNALSAAWGGTSRKRAATEDEY
FDDDEEEAVPDLAYIPAPGSPTRIEMERKKQIEEEEDDPLDAYMAGIERQMEKQTQAPQQ
SGVRNDLEEEDVEESYYRYMEENPNAGLLPVDEEFPDLEYDSDGNPIAPDKKKIIDPLPP
IDHSEITYEPFAKVFYEEHPEIKALAVDQVTELRKIIDITVSGNSPPKPVSSFAHFGFDD
KLLKAIIKAEYSSPTPIQAQAIPCALMGRDVLGIAQTGSGKTAAFLWPMIKHIAAQKPVE
EGEGPIGLILAPTRELAIQIYTEAKKFAKVYDLKVICAYGGGSKWEQSLALKEGGEIVVA
TPGRIIDHIKGGATNLQKVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFR
KRIEKLAKDALTDPIKISQGTTGQANEDVTQHVLLLPSQEYKRIWLFKKLVELLSAGSVL
VFVTKKLDAEMVAKDIKLKEFDCLLLHGDMEQADRNKVITAFKKKECSLLVATDVAARGL
DIPHVRTVVNYDIARDIDTHTHRIGRTGRAGTQGTAYTLLTVKDKEFAGHIVRNLEAAHQ
EVPQDVLDLALQSSWFKKQRYRKKDQNPNVGGLGLGFKEKASVPSNSSGSAPSQKSQVSR
GPATDRLSAMKEAFKTQYQNQFTASSDQPPPPVSRKKTRWE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaactatgcaaacatccattccaacaatacgaaacgtcataatgcggtacct
ccaccttctagtggtgttagtaaacagggctactcaacaatgaacgcaatcagtcagaat
gccctctctgcagcttggggtggtacaagcaggaagagagctgctacggaagatgagtac
tttgatgatgatgaagaagaagccgttcccgacttggcttacatccccgctccgggaagt
ccgactaggattgaaatggaaaggaagaagcaaattgaagaggaagaagatgacccactg
gatgcgtacatggcaggcattgaaagacagatggagaaacaaacgcaagcaccgcagcaa
tcaggagtacgtaatgacttggaagaagaggacgtagaggagtcctactaccgatacatg
gaagaaaaccccaatgcaggacttcttccagtagacgaagaattccccgatctggaatac
gactcagatggcaatcccatagcaccagataaaaagaaaatcatcgatcctctccctcct
atcgatcattcagaaataacttacgaaccattcgcgaaagtgttttacgaggaacatccc
gaaattaaagcgttggcggttgatcaagtgactgaattgaggaaaattatagacattacg
gtatcgggtaattcaccgcccaaacctgtatcttcttttgctcattttgggtttgacgat
aagctgctaaaggcaatcatcaaagcggagtatagttccccaacaccgatccaagcgcag
gccattccttgtgctctcatgggcagggatgtgctgggaattgcacaaacaggtagtggt
aaaactgcagcatttctatggccgatgataaaacatatagcagctcaaaagccagttgaa
gaaggagaaggtccaatcggtctaattttggctcctactagagaattggcaatccagata
tatacagaggctaagaaatttgcaaaagtgtatgatttgaaagttatttgtgcttatgga
ggaggatcaaaatgggaacaaagtttggctctgaaagaaggaggcgaaatagtcgtagca
acacccggaagaataatcgaccacattaaaggcggagctacgaatctacagaaagtcaca
ttccttgttcttgatgaggcagacagaatgttcgaactcggttttgaaccgcaagttcga
tctgtttgtaatcacgttcgtccagataggcagacactcttgttttcagcgacattcaga
aaaaggattgagaagttagcgaaggatgctctaacagatcccatcaaaatctctcaggga
accacaggacaagccaacgaggacgttactcaacatgtgctgttattgcctagtcaggag
tacaaaaggatttggctattcaagaagcttgtcgagcttttgtctgctggctcagtgtta
gtgtttgttactaaaaaattggacgctgaaatggtagcaaaagatatcaagttgaaagaa
tttgactgtctattattacatggagacatggagcaggcggatcgtaataaagtaataaca
gccttcaagaaaaaggagtgttctctattggtggctaccgatgttgctgcccgcggtttg
gacatccctcacgtcagaacagttgttaattatgatatagcgagagatatcgatactcac
acccacagaatcggtaggactggaagggctggcacccagggtactgcttatacgttactc
actgtcaaagataaggagtttgccggtcacatcgtaaggaatttggaggctgctcatcaa
gaagtgccacaggacgttttggatttggcgctgcagagttcttggttcaaaaaacaaagg
taccgaaagaaagatcaaaatcccaatgtgggaggattgggacttggattcaaagagaag
gcatccgtgccttcaaattcatcaggttccgcaccatctcaaaaatcccaggtttctaga
ggaccagcgactgacagattatcagcgatgaaagaagcgtttaagactcagtatcagaat
cagtttactgctagttcagaccaacctcccccaccggtttcaaggaagaaaacaaggtgg
gagtag
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