| Entry |
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| Name |
(GenBank) DEAD box ATP-dependent RNA helicase SrmB
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| KO |
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| Organism |
lde Lactobacillus delbrueckii subsp. bulgaricus ND02
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:lde00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDBND_0306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:lde03019]
LDBND_0306
03009 Ribosome biogenesis [BR:lde03009]
LDBND_0306
Enzymes [BR:lde01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDBND_0306
Messenger RNA biogenesis [BR:lde03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LDBND_0306
Ribosome biogenesis [BR:lde03009]
Prokaryotic type
rRNA helicases
LDBND_0306
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
315501..316946
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| AA seq |
481 aa
MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL
QKLDLDKQEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKK
APEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTL
LFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVEN
PDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDV
AARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLI
KKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK
ELSNDSEVTVTITPENPRSYRGKHSGGRGSRSRSGNNNFKGKRNFDRKKRKPGFKFHGRK
G |
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| NT seq |
1446 nt +upstreamnt +downstreamnt
ttgaaatttactgaactaggattgaacgataatatcttaaaggcaattaagcggtcaggc
tttgaagaagccaccccgatccaggcccagaccattcctttggctctggcaggccaggac
gtgatcggccaggcccaaaccgggacggggaagaccgctgcctttggtctgccaatcctg
caaaagctggacctggacaagcaggagcaagccatccaggccatcgtaattgaaccaacc
agagagctggccatccagacccaggaagaacttttccgcctgggcagagacgaaaatgcc
aaggtccaggtcgtttacggcggggcggacattggccggcagatccgggccttgaagaag
gcgccggaaatcctggtcgggactcctggccggcttttggaccacttgaagcgcaagacc
atcaagctggacggcgtcaagacagttgttttggacgaagccgacgaaatgctggacatg
ggcttcatccaggatatcgaaagcatcttaacctatgctgaaaaccgggaccagaccctc
ttgttcagcgcgaccatgccaaagccaatccaggctttgggcgaaaagttcatgcatgac
ccgcaagtcgtgaagatccaggccaagcaactgacggctgatttgatcgaccagtacttc
gtccgcgtccgggaaaacgaaaagttcgacaccatgtgccggctgatcgacgtggaaaat
ccggacctggccgtggtctttggccggaccaagcgccgggttgacgaactgacccggggc
ctggttgcccggggctacaacgcggccggcatccacggcgacttgacccaggcccggcgg
atgcaggtgctcaagcgctttaaggaaggggagcttgacattctggtggctactgacgtg
gctgcccggggcctggacatttccggggttacccatgtttacaactacgacattccgcaa
gacccggactcctacgtccacagaatcggccggaccggccgggccggcaagagcgggatg
agcgtgaccttcgtgacgccaaacgagatcggatacatgcggactattgaggacttgatc
aagaagaagatgtctcctctgcgtccgccgacagacgcccaggcctttgccgggcagatg
aagcaggcggtcttgaaggtggacgacctgttgagcggggatttgagcaagtatgacgac
gcagcggaaaagctgctggaaaattactcagctgaagacatcgccgctgctttgctgaag
gaactctctaacgacagcgaggtcacggttaccatcacccctgaaaaccctcgctcttac
cggggcaagcactcaggcggccgcggtagccgcagccggagcggtaacaataacttcaag
ggcaagcgcaattttgacagaaagaagcgcaagccaggctttaagttccacggccggaag
ggctaa |
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