Lactobacillus delbrueckii subsp. bulgaricus ND02: LDBND_0543
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Entry
LDBND_0543 CDS
T01360
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lde
Lactobacillus delbrueckii subsp. bulgaricus ND02
Pathway
lde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDBND_0543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lde03019
]
LDBND_0543
Messenger RNA biogenesis [BR:
lde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDBND_0543
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
ADQ60592
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Position
554270..555850
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AA seq
526 aa
AA seq
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MGCLIGYAIRKNAWETKAENARQSAEAILAKAKAEVEAAKAEVQAQKQAAEAVKRDAETE
KKAKILEAQEEIRDYRQKVEDELNRRRAEAARKENRLQQKEDALDHRSSLLDDREKQLTQ
RKDQIKKQEEKAAGLLEEAHGLVEKQNDKLLEISHLDEEEAKKIVLAQVSDHLTKEKAEL
IRANEEEISARADRFAHQIIVDAIQSSAADTVAETTVSVVDLPNDDMKGRIIGREGRNIR
SFEAMTGVDLIIDDTPKTVTLSGFDSIRREVAKRALQKLIKDGRIHPARIEEMVDKARKE
VNDDIYEAGESALMELGIHRMNPELVKILGRLKYRTSYGQNVLAHSIEVGKLAGTMAAEL
GLDEKLAVRAGLLHDIGKAIDHDIEGSHVEIGVELTRKYHESDLVVNAIAAHHGDVPKLS
FIADLVVAADTISSARPGARSESLENYIRRLTELEDIAGSYDGVKQAYAIQAGREVRVMV
EPGKISDDETTVLAHEIRDRVEKELDYPGNIKITVIREKRAVAVAK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
gtgggatgcctgattggttatgccatccggaagaatgcctgggaaaccaaggcggaaaac
gcccggcagagcgcggaggcaattttggccaaggcgaaagccgaagtcgaagcagccaag
gctgaggtccaggcgcagaagcaggccgctgaagccgttaagcgggatgctgaaacggag
aagaaggccaagatcctggaagcccaggaagaaatcagggattaccggcagaaggttgaa
gacgagctgaacaggcgccgcgcagaagcggcccgcaaggaaaaccgccttcagcagaaa
gaagatgccctggatcaccgcagcagcctgctcgatgaccgggagaaacaactcacacaa
aggaaagaccaaatcaaaaagcaggaagaaaaagccgctggtttgctggaagaagcgcac
gggctggtcgagaagcagaatgacaagctgctggaaatctcccacttagacgaagaagag
gccaagaagattgtcctggcccaggtctccgaccacctgaccaaggagaaggcggagctg
attcgggctaacgaggaagaaatcagtgccagagccgaccgctttgcccaccaaatcatc
gtggatgccatccagagcagcgcggcggatacggtcgcggaaacgaccgtgtcagtcgtg
gacctgccaaacgatgacatgaaggggcggatcatcggccgcgaaggccggaacatccgc
tcttttgaagccatgactggggtagacttgatcattgacgatacgccaaagacggtcacc
ttgagcggttttgactccatcagacgggaagttgccaagcgggccctgcagaaactgatc
aaggacgggcggattcatccggcccggatcgaagagatggttgacaaggcgcgcaaggaa
gtcaacgacgatatttacgaggctggtgaaagtgccttgatggaactgggcatccaccgg
atgaacccggaactggtcaagatcctgggccggctgaagtaccggacttcctatggccag
aacgtgctggcgcactcgattgaagtcgggaagctggccgggaccatggcagctgaactt
ggtttggatgaaaaattagcggttcgcgcgggattattacacgatattggcaaggcaatc
gaccatgatatcgaaggctcccacgtagaaatcggtgttgaattgacccggaaataccat
gaatcggacctggtggtcaacgcgatcgctgcccaccacggtgacgtgccgaagctctcc
ttcatcgctgacctggtcgtggcggcggacacgatttcctccgcccggcctggggcaaga
agcgaaagcttggagaactacatccgccgtttgacggaactggaagacattgctggcagc
tatgacggcgtcaagcaggcatatgccatccaggccggccgggaagtccgcgtaatggtt
gagccaggcaagatctcagatgatgagaccacggttttggcccacgaaatccgggacagg
gtcgagaaagaactcgattacccgggcaatatcaagatcaccgtaatacgggagaaacgt
gccgtggcagttgccaaataa
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