Lactobacillus delbrueckii subsp. bulgaricus ND02: LDBND_0696
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Entry
LDBND_0696 CDS
T01360
Name
(GenBank) mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lde
Lactobacillus delbrueckii subsp. bulgaricus ND02
Pathway
lde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDBND_0696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lde03019
]
LDBND_0696
Messenger RNA biogenesis [BR:
lde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDBND_0696
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
ADQ60743
LinkDB
All DBs
Position
complement(698001..699680)
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AA seq
559 aa
AA seq
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MKIKQNEVAVFAIGGLHEIGRNMYCVQYQDEIVIMDCGIKFPEDDLLGINYVISDYSYLV
KNREKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALALIKSKCEEHGILDRTELH
EEHEDTVLTFDKLKVTFFRTTHSIPDTLGIAVHTPLGAVVFTGDFKFDLTPVMNQPAPNF
QRMAQLGEEGVLALLSDSTNAEVPQFTKSERFVASSLHNIITGIEGRIIFATFASNLYRV
STAIQAAIDTGRKVAIFGRSMENGIQNGIDLGYLDVPEGLIVDAEAINSLPPEKVMLLCT
GSQGEPLAALSRIANGTHRQIKLKPHDTVIFSSNPIPGNTLSVNQLINKLMEGGANVVHG
RVNNVHTSGHGGQEELKLMVELTKPKYMIPVHGEYRMQVVHAHLAQQAGVPAENTFVLKN
GEVVCFSPEGARIAGDIHVKDVFVDTSGAADVGNIVVRDRQILSEEGLVVAVATVDYKHK
QVLAGPDILSRGFVYMRESQDLINAAQKLVYHVLKTEMAKSDKPKDSEIRKAIIESLQDF
LYSRTERRPMILPMLVEKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgaagattaagcaaaacgaagtagccgttttcgcgatcgggggattacacgaaatcggc
cgtaacatgtactgtgtccagtaccaagacgaaatcgtcatcatggactgcggcatcaag
ttcccggaagatgatctgctggggatcaactatgttatctccgactactcttacttggtc
aagaaccgggagaagatcaaggccctggttgtcagccacggccacgaagaccacatcggc
gggattcccttcctgctggaaaagattccggaaattccagtctacgccacgccttttgcc
ctggccttgatcaagagcaagtgtgaagaacacgggatcctggaccggaccgagctgcat
gaagagcacgaagacacggttttgacttttgacaagctgaaggtgaccttcttcagaacc
acccactcaatccccgacactttggggattgccgtccacactccgctgggcgcggtcgtc
tttactggcgactttaagttcgacctgaccccggtcatgaaccagccggcccctaacttc
cagagaatggcccagctgggcgaagaaggcgttttggccctcttgagtgactcaaccaac
gccgaagtgccgcagtttaccaagtctgaacgcttcgttgccagctctttgcacaacatc
atcaccggcattgaaggccggatcatctttgccactttcgcttccaacctttaccgggtg
tcaaccgccattcaagccgcgatcgacaccggccgcaaggtggcgatttttggccggagc
atggagaacgggatccaaaacgggatcgacctgggctatctggatgtgccggaaggcttg
attgtcgatgctgaagcaatcaactccctgccgccggaaaaggtcatgctcctctgtacc
ggttcccagggtgaacccctggctgccctctcccggattgccaacggcacccaccggcag
atcaagttgaagccgcatgacactgtgatcttctcttccaacccgattccaggcaacacc
ctgagcgttaaccagctgatcaacaagctgatggaaggcggggccaacgtggtccacggt
cgggtcaacaatgtccacacttccggccacggcggccaggaagaactgaagctgatggtc
gaactgaccaagccgaagtacatgatcccggtgcacggtgaataccggatgcaggttgtc
cacgcccacctggcccagcaagcaggcgtgccggcagagaacaccttcgtcttgaagaac
ggtgaagtggtctgcttcagccctgaaggggccagaatcgccggcgacatccacgtcaag
gacgtcttcgtcgacacttccggtgctgctgatgtcggcaacatcgtggtccgcgaccgg
cagatcctgtctgaagaagggctggtagtagccgtagccacggttgactacaagcacaag
caggttttggcaggccctgacatcctcagccggggctttgtctacatgcgtgaatcccag
gacttgatcaacgcggcccagaagctcgtctaccatgtcttgaagacggaaatggccaag
agcgacaagcctaaggacagcgaaatccgcaaggcgatcatcgagagcctgcaggacttc
ctatactcccggactgaaagacggccaatgattctgccaatgctggtcgaaaagaaataa
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