Leptosomus discolor (cuckoo roller): 104341957
Help
Entry
104341957 CDS
T08399
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03013
Nucleocytoplasmic transport
ldi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104341957 (UPF2)
03015 mRNA surveillance pathway
104341957 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldi03019
]
104341957 (UPF2)
Messenger RNA biogenesis [BR:
ldi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104341957 (UPF2)
mRNA cycle factors
P-body specific factors
104341957 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
104341957
NCBI-ProteinID:
XP_009955544
LinkDB
All DBs
Position
Unknown
AA seq
1185 aa
AA seq
DB search
MPAERKKPANMEEKESPLNNKDKEFSERRPVSTREKPKEDVKVGVKRETLKVPEDKKKKL
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKEAPGSEDLELELENLDINDDTLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQVRVY
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagagaaagaatctccgttaaataat
aaggacaaagaattcagcgaaaggcgaccagtaagcaccagggagaagccaaaagaagat
gtcaaggttggtgtgaagagagagactttaaaggttcctgaagataaaaagaaaaaactg
gaagaggataaaagaaaaaaggaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaggag
gagaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaagcagctgctcaactg
aaagaaaaagaggaagcacatcagctccatcaagaggcttgggaacgccatcaggcaagg
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagactggattccagtctgaagaagaacacagcttttgtgaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaacagcctgaatttaagcaaatac
attgcagaagctgtagcttctattgtggaagccaaactgaaaatatccgatgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgctacgctgattttgctccttcattactt
caggcttggaaaaaacattttgaggcaaggaaagaagagaaaactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggc
ttggtaccgaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacagcagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaaaggagagctgagtgaagatcgacacaagcaatatgaggaa
tttgcaatgtcctatcagaagctgttggcaaattctcaatccctagctgatcttttggat
gaaaatatgcctgaccttccccaagagaaaccaacacctgaggaacatggacctggtatt
gatattttcacaccaggaaagcctggagagtatgacctggaggggggtatctgggaagac
gaagatgctagaaacttctatgagaatctcattgacttaaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatgttcccagaacaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcacctgggagtgaggatttggagttggag
ctggagaacctggatattaatgatgataccctggagttagactgtggagatgaggcagaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtacggga
tctcatttaaaacttatagtagatgcttttcttcagcagcttccaaactgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagccaacaga
agaaaactagtacgggcactcttcatagttcctagacaaaggttggatttgctaccgttt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctttgt
tccatgctgaaaggggatttcaggtttcatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagattcattggtgagcttaccaagtttaagatgttctccaaa
aacgatactctccactgtttaaagatgcttctgtcagacttttctcatcaccatattgaa
atggcatgtactctgctggaaacctgtggaagattcctctttagatcaccagaatctcac
ttaagaaccagtgttcttctggaacaaatgatgagaaaaaaacaagcaatgcatcttgat
gcccgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctctgcaggaatatattcgtaagcttctgtacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gacgcagaagtaaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtt
ggaattcacgttgtggatggagtgctagaggatattcgactaggaatggaggttaaccag
ccaaaatttaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattat
cggatggtggaatcagctgtaatatttcgaactctgtattctttcacatcatttggtgtg
aaccctgatggtagtcctagtccactggaccctccagagcatcttttcagaatcagacta
gtttgtactatcctcgatacctgtgggcagtattttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtgtattttcagcggtatgtttggtggaaaaaaagtctggatgtt
tggacaaaagaccacccatttcctatagacatagactatatgatcagtgatacgctggaa
ctgctgagaccaaagataaagctctgcaattcactggaagaagcaatcagacaggtgcaa
gacttggaacgagaattcctaataaaattaggaattgtgaatgacaaagattccaaagat
tccattaccgaaggagagaacctggaagaggatgaagaggaggaggaaggtggagcagag
acagaggaacaatctgggaatgaaagtgaagtaaatgagccagaagaagaggaggggtct
gacaatgaggaagaagaaggtgaagaagaggaggaagaaaacacagattatcttacagac
tccaataaggaaaatgaaaccgatgaggagaatacagaagtaatgattaaaggaggagga
cttaagcatgtcccttgtgcagaagatgaggacttcattcaggcattggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtacatcagttggatgttgct
attcctttacatctcaaaagtcagctcaagaagggtcccccacttggaggtggggaagga
gagtcagagtctggagacacaatgccatttgtcatgttaacacgaaaaggcaacaaacag
caggtaagagtttat
DBGET
integrated database retrieval system
