Leptosomus discolor (cuckoo roller): 104342408
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Entry
104342408 CDS
T08399
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104342408 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ldi03041
]
104342408 (DDX42)
Enzymes [BR:
ldi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104342408 (DDX42)
Spliceosome [BR:
ldi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104342408 (DDX42)
Complex B
104342408 (DDX42)
Complex C
U2 SnRNP specific factors
104342408 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104342408
NCBI-ProteinID:
XP_009944313
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGNLSSVPT
FPSVGVQGFNSTNASTN
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctgggaaaaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatccggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgtcgaattgccgtacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggccgaaaaccccactgccggtgtggtccaagaagaggaagaggataac
ctggagtatgacagcgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacccattgaccattcagagattgagtatccaccgtttgagaagaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgctgctcctccaaggccaggcagtagttttgctcattttgggttt
gacgagcaacttatgcatcagattaggaaatccgagtacacccagcccacccctatacag
tgtcagggcgttccagttgcactaagtggcagagatatgattgggatagcgaagactgga
agtggaaaaacagcagccttcatctggccgatgttgatccacatcatggatcagaaggag
cttgaaccgggggatggtcccattgcagtgatcgtctgcccaaccagagagctttgccag
cagatccattctgaatgtaagcgctttggtaaggcgtataatctgcgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggagcagagatagtt
gtctgcacaccagggcgcttgattgatcatgtgaaaaagaaagctacgaaccttcaaaga
gtcacttaccttgtgtttgatgaagctgacagaatgttcgatatgggttttgaatatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctgttgttcagtgccact
ttccgtaagaagattgagaagttggcccgagacattctgatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacgcctggtggagttcacgtcttctgggagt
gttctcctgtttgtcaccaagaaggcaaatgcggaggagctggccaataacctcaagcag
gaggatcataatctggggctgcttcatggagacatggaccagagtgagaggaataaagtc
atttcagaatttaagaagaaggggatcccgatactggtagctactgatgtggcagcgcgt
gggttagatattccttccattaagaccgtcatcaattatgatgtggctcgggacatcgac
acgcacacccatagaatcggtcgtactggcagagcgggcgagaagggagttgcctacact
ctgctgacccccaaagacagtaacttcgctggtgatctcgtcaggaatctggaaggcgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccctggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggcggcttaggatac
cgtgaacgtcctggtctgggatcagaaaactctgatcgtggcaacaacaacagtgtgatg
agcaactatgaggcctacaagccgtccacgggggcgatgggagaccgacttacggcgatg
aaagcagcttttcagtcccagtataagagccactttgttgctgcaagcttaaataaccaa
aagactggtagctccgctgctggcgctagcggctggaccagcgcggggagcttgaactcg
gtcccgacaagttcagcgcagcaaaacgccgcaaatcctgacagccccattgcagccacc
gcagcggcgaagggtgttccgggcttcaccagcacggggaatctgagtagcgttcccacc
ttcccgagtgtcggagtacagggcttcaacagcacgaatgccagcaccaac
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