Leptosomus discolor (cuckoo roller): 104342910
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Entry
104342910 CDS
T08399
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
ldi
Leptosomus discolor (cuckoo roller)
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ldi03021
]
104342910 (SCAF8)
03041 Spliceosome [BR:
ldi03041
]
104342910 (SCAF8)
Transcription machinery [BR:
ldi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104342910 (SCAF8)
Spliceosome [BR:
ldi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104342910 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104342910
NCBI-ProteinID:
XP_009944985
LinkDB
All DBs
Position
Unknown
AA seq
1330 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFDFGEESEQNEEPKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQ
PQKASPEETQEGNFGSEHSASPSQGSSQQQFLEVETNVDDSMDIQQQDMDIDEGQDVAEE
EIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDV
DLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENVQTTQSVAVDKST
VITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNP
SQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTSLVLPVGT
ITSNLATPTLSAGSIFNPLPINKPESDEKGSHLTDLQISSSENSRSVQSDVSSSSGLVGG
VQPPSVSSSSGLTGEGQAPSVSSSSGLAGGVQPPSVSSSSGLGGGVQPPTVSSSSGLAGG
VQLPTVSSSSALVGGVQPTSVSSSSGLIAGVQPPNVSSSSGLLAGVHPPSVSSSPGLLTG
MQPPNVSSSSGVLPGVQPPSVSSNSGLLLMPPPNVSSSSGLMGVPPPNISSSSGLMAMQH
PAGVQNMPHLNISSQRMPGMPLIDIRPGLMPHSPGPRFPLMQPGMPPQRSIPPPAILDPS
LHPPPRGPFPPGDIFNQTERPFGTPGRQNIESISNPEKXXXXXXXXQEGDRDYRFPPVEN
RDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVDGREHFARPHVDMRENFGRPGLDNLGRR
EHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGPSWNRGF
EQDAHRDFDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDG
ATSQRKADNMPQVNGENTETESQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADIESEP
VVESTETEGT
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcacgttgtacag
agtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtacctggtctgtatgtc
attgactccattgtaagacagtcccggcatcagtttggccaagaaaaggatgtatttgct
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgtcctggggat
gacaagagtaaaattgttagagtgctgaatttatggcagaagaataatgtgttcaagagt
gaaattattcagcctctcttggatatggcagcaggcattcctcctccagttgtgacccct
gtcttgcccagcactacagccgccatgagcaacaacacaccaggaacacctgtgacacca
gttactccagccaatgtggtgcagagtttacccgatccttgggtatctcagattgctaat
acagatactcttgctgctgttgcacagattttgcagagtcctcaaggccaacagcttcag
cagttgatacagacactgcagatacagcagcagaaacctcagccttcactacttcaagcc
ctggatgctggtcttgtcgtccagttacaggccctcacagcacaacttacagctgcagct
gctgctgctaacacacttaatccactggaacagagtgtctcttttaataagaagctgatg
gataggtttgactttggagaagaatctgaacaaaatgaagagcctaaaaaggaaactccc
acttcccaactgcctttagtaccagaatctgtgaacaactcactttttcaccaattagct
gaacagctacagcaacaaaatttagaacatctcagacaacagcttctggagcaacaacag
cctcaaaaggcaagccctgaggagactcaagaaggcaattttggttcagagcactctgcc
tcaccatcacaagggagtagtcagcagcagtttttagaagtggaaacaaatgtagatgat
tcaatggatattcaacaacaggacatggatatagatgaaggacaagatgttgctgaagaa
gagatttttgaacaagaagaaaaaaaatcagccgttcgttcaagatcaagaactcgttca
agatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgatctggttctcgtaag
cgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaagagaaagtcatctcgg
tcgtattccagtgaaagaagggctcgggaaagagaaaaagaacgtcagaaaaagggattg
cctcctgtacggtcaaaaacactaagtgtttgcagtactactctttgggtaggtcaagta
gacaagaaggccacacagcaagatttaactaacttgtttgaagaatttggacaaatcgag
tcaattaatatgattcccccaagaggttgtgcttatgtctgtatggttcatagacaagat
gcgtatcgtgctcttcagaaacttagttctgggtcctacaaaattggatctaaaattatt
aagattgcctgggctttgaataaaggggtgaaaactgaatacaagcagttctgggatgta
gatctgggagtttcgtatattccttgggagaaagtaaaattggatgatttggagggcttt
gctgaaggtggcatgattgaccaggaaacagtaaatacagaatgggaaacagccagaagc
tcagaagctgctaaagaaaatgttcaaactacgcagagtgttgcagttgataagagtaca
gttattacaacgcagacagaagcttacacgcaaccagtcactatgctgcagatcccagta
gctccagccgtgcctgctgttagcttggttccacctgcgtttcctgtcacaatgtctgtc
ccccctcctggttatagcgcaattcctcctccacccttcttgcgagcgagtttcaaccct
tcacagccacctccaggttatatgcctcccccagttccacctgtggtccctccacctgtg
gtcccaccacctgttgtcccaccagttgttccaacacctttagtacagcctccattacca
attgcacaagagacgatgaaggatgttccttttactagccttgttctaccagttggcaca
attactagcaatctagctactccaacgttatctgctggaagcatttttaatcctctgcca
atcaacaaaccggaatcagatgaaaagggatcgcatcttacagaccttcagatttcttcc
agtgaaaacagtagatctgtgcaaagtgatgtttcgagtagctctggacttgttggagga
gtgcagccacccagcgtctcaagcagttctgggcttactggagaagggcaagcacccagt
gtctcaagtagctctggacttgcagggggagtacagccacccagtgtttcaagcagctct
ggacttggaggaggagtgcaaccacccactgtttcaagcagttctggtcttgcaggagga
gtgcagctacctactgtctccagtagctctgctcttgttggtggagttcagccaaccagt
gtctcaagtagctctggacttattgctggagtgcaaccaccaaatgtctcaagtagctca
gggcttctagctggagtgcatccacccagtgtctcaagcagccctggccttctgacagga
atgcagccacccaatgtgtcaagcagctcaggagttctgccaggagtacagccaccgagt
gtctcaagcaactctgggcttctcttaatgccaccacccaatgtttcaagtagctctgga
cttatgggagtgccgccaccaaatatttcaagtagttctggacttatggcaatgcagcat
ccagctggggttcaaaacatgcctcatttaaatattagtagtcaaaggatgccgggaatg
cctcttatagatatccgtccaggcctaatgccccattcgcctgggccaaggtttccatta
atgcagccgggaatgccaccgcagcgtagtattcctcctccagcaatccttgatccgtct
cttcacccaccacctcgaggtccttttcctccaggtgatatttttaatcaaacagaaaga
ccttttggaacaccaggaagacaaaatatcgagagcatttctaatccagagaaannnnnn
nnnnnnnnnnnnnnnnngcaggaaggagacagagattatcgctttcctccagtggaaaac
cgagataatcttaacagaccatctccagtggatgtcagagattctgttgggcgaccacca
gttgatccaagagaaggtataggaaggcctccagtagatggaagagaacactttgcaaga
ccacatgtagacatgagagaaaattttggaagaccaggtttagataaccttggtcgaaga
gagcattttggtttcaattcagacaagcactgggggcagagaggagactatgatgaaaga
gagcaccatgccttccctatttatggtggcccgaaaggctttcatgaagacagagagagg
tttcggcatgtaaactataggtttgatagtagaagtggtcccagttggaatagaggattt
gaacaagacgctcacagagattttgatgaccgcagaagaccctgggaaagacagagggat
agggatgacagagattttaatttttgcagagaaattaatgggaacaggtttggaagagac
agaatgtcaaacaactggatcccccctccgcatccacgggtttttgaatattttgatggg
gccacttcccaacgcaaagctgataatatgccccaggtaaacggtgaaaatacagagaca
gaaagtcagccaccaactgcacaggtgcaggatgatccggaactttatgaaaaactgaca
tcttccgtcgagataaacaaagagaagagtgacacagaagctgatatagaaagtgaacca
gtggtagaaagcacagaaactgaggggacataa
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