Leptosomus discolor (cuckoo roller): 104344598
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Entry
104344598 CDS
T08399
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ldi
Leptosomus discolor (cuckoo roller)
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ldi03016
]
104344598 (RTCB)
Enzymes [BR:
ldi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104344598 (RTCB)
Transfer RNA biogenesis [BR:
ldi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104344598 (RTCB)
Prokaryotic type
tRNA splicing ligases
104344598 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104344598
NCBI-ProteinID:
XP_009947071
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
LLQAVPVFLIDSNPRSLSLVSPPLTLVSTKAFISKGGVGFDINCGVRLLRTNLDESDVQP
VKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGR
MLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMI
HSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAAAGNXFF
RSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRA
FPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSR
RNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPI
AVIKG
NT seq
1280 nt
NT seq
+upstream
nt +downstream
nt
gtttacttcaggcagttccagtgttcctgattgactcaaacccaagatctcttagtctgg
tatccccacctctgacactagttagtaccaaagccttcattagtaaaggtggtgtcggat
ttgacattaactgtggtgtccgcttactacgtacaaatttggacgaaagcgacgtgcagc
ctgtcaaggagcagcttgcccaggctatgtttgaccacattcctgttggtgttggctcca
aaggtgtcatccccatgaacgccaaagatttggaagaggcgctagagatgggtgtggact
ggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaa
gaatgctgcaggctgaccccaacaaggtctcctcaagagccaagaagaggggcctgcctc
agctggggaccctgggagccggaaaccattacgccgagatccaggttgtggatgacattt
acaacgaatatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatga
tccacagtggcagcagaggtctgggccaccaggttgccacagatgcattggtggctatgg
aaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgtgccagga
ttgcctccgcagagggacaggattacttgaagggaatggcagctgctgggaacntatttt
tccgctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaaccc
cagatgaccttgatatgcacgtcatctatgatgtgtctcacaacattgccaaagtggagc
aacatgtagtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccaggg
ccttccctccgcaccatcctcttatcgctgttgattatcaactgactggacagcctgttt
tgatcggcgggactatgggcacctgtagctatgttcttactggcacagagcaaggcatga
ctgagaccttcggaactacttgccatggagctggtcgtgcactgtcccgagccaaatctc
gacgtaacttggacttccaggatgtattggacaagctggctgacatggggattgccatcc
gtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgacag
atgtggttaacacctgccacgcagctggcatcagcaagaaagccattaaactgagaccta
ttgctgtcataaaaggctag
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