Leptosomus discolor (cuckoo roller): 104347179
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Entry
104347179 CDS
T08399
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104347179 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ldi03041
]
104347179 (SF3B1)
03036 Chromosome and associated proteins [BR:
ldi03036
]
104347179 (SF3B1)
Spliceosome [BR:
ldi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104347179 (SF3B1)
Complex B
104347179 (SF3B1)
Complex C
U2 SnRNP specific factors
104347179 (SF3B1)
Chromosome and associated proteins [BR:
ldi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104347179 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
104347179
NCBI-ProteinID:
XP_009950441
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MVVQAGIVMNIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgcaggcaggaatagtcatgaatattgaagcgcaaattcgagaaattcaaggg
aaaaaacctgctcttgatgaagctcaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcaggtttgctggatatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccttctacgagtttgcttggccagaagaag
ccagggtaccatgctccggtggcattgcttaatgacataccacagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgctgatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagatcctaaaatgaatgccagaacgtacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcatctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattatctagttgggatcaagcagag
actcctggacatacaccatctctgcgatgggacgaaactccaggccgtgcaaagggtagc
gaaactcctggtgccaccccaggctcaaaaatatgggatccgactcccagtcatacaccc
gcaggagctgcaacacccggtcgggacacacccggtcatgcaacaccaggccatggaggc
gccacttccagtgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatact
ccgggacatggcagtggatgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaactccaggagcgagtaaaagaaagtcacgatgggatgaaacacctgct
agccagatgggtggtagcactcctgtcctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactcctacaccaggtcatatcatgagcatgactcctgaacaactg
caggcttggcgttgggaaagggaaattgatgagagaaacagaccactttctgatgaagag
ttggatgctatgtttccagaaggatataaggttcttcccccaccagctggttatgtacct
attcgcactccagctcgtaagcttacagcaactccaacacctttgggtggtatgactgga
ttccacatgcagacagaagaccggactatgaagagtgttaatgaccagccatctggcaat
cttccgttcctgaaaccagatgatatccagtactttgataaactgctggttgatgttgat
gagtcaactctgagcccagaagagcagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgaggaaggctgcgttgcgacaaattactgataaagct
cgtgaatttggagcagggccgttgtttaatcagattctgcccttgctgatgtcgccaact
cttgaagatcaggagcgtcacttgcttgtcaaagtgattgacagaattctttacaaactg
gatgacttggtccgaccatatgtacacaagatccttgttgtcattgaaccattgctgatt
gatgaagactactatgctagggtggaaggcagagaaattatttcaaacttggctaaggct
gctggtttggcaacaatgatctccacaatgcgacctgatattgataatatggatgaatat
gtccgaaatactacagctcgagcctttgctgtcgttgcctcagctttgggcattccttct
ctgttacccttcttgaaagctgtctgtaaaagcaaaaaatcctggcaggctaggcatact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcttgcctcacctc
aggagcttggttgaaattattgaacatggtcttgtggatgagcagcagaaagttcgcacc
atcagtgctttggctattgctgcgttggctgaggcagctactccctatggcattgagtca
tttgattctgttctgaagcctttatggaagggtatacgtcaacacagaggaaagggtttg
gctgcctttctgaaggctattggttatctgattccactcatggatgctgagtatgcaaac
tattacaccagagaagtcatgctaatccttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcaatgttgcggtacggatggtgttgaagca
aactacattaaaacagaaatcttgccaccttttttcaaacacttctggcagcacagaatg
gcattggacagaagaaattacagacagttggttgatacaaccgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgaacag
tacagaaaaatggtcatggaaacaattgagaagatcatgggaaatctgggggcagcagac
atcgatcataaactggaagaacaacttattgatggcatcttgtacgcctttcaggaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagttaagccctacttgccacagatctgtggtacagttctgtggcgtttgaacaacaaa
tcggctaaagttaggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtgttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcacttaaggctatcgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggcttacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgcattgca
gaccgaggtgcagaatatgtttctgcaagagaatggatgagaatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatccgaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggctacactgctaaataacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgagtacagagttccagaactgaacgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatatattggagaaatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgctgtggtgcaacatatgtctcttggtgtttatgggtttggc
tgtgaagattctcttaaccatttgttaaattacgtgtggcctaacgtgtttgaaacctct
cctcatgtcattcaggcagttatgggagctctggaaggcctcagagttgctattggtccc
tgcagaatgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagac
gtttattggaagatttataattcaatctacatcggatcacaggatgctctgatagcacac
tatccaagaatctataatgatgaaaagaacacctatattcgttacgaacttgattacatc
ttataa
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