Leptosomus discolor (cuckoo roller): 104348007
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Entry
104348007 CDS
T08399
Symbol
COL4A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi04382
Cornified envelope formation
ldi04510
Focal adhesion
ldi04512
ECM-receptor interaction
ldi04518
Integrin signaling
ldi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104348007 (COL4A1)
04518 Integrin signaling
104348007 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104348007 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104348007 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104348007 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ldi04147
]
104348007 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
ldi00536
]
104348007 (COL4A1)
Exosome [BR:
ldi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104348007 (COL4A1)
Glycosaminoglycan binding proteins [BR:
ldi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104348007 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104348007
NCBI-ProteinID:
XP_009951487
LinkDB
All DBs
Position
Unknown
AA seq
1631 aa
AA seq
DB search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NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
ggggaaagaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacct
gaaggtccccctgggccaccagggcttaagggtgatactggagaaccaggactgccagga
acaaagggaacaaggggcccaccaggagtatcaggctttccaggaaacccaggccttcct
gtcattcctggacaagatggccctcctggtccacctggcattccaggatgtaatggcaca
aagggtgaaagaggtccagtaggtcccccaggtttaccaggactgactgggagcatagga
cccccaggacctcctggaatgaagggagatccaggtgaagtgattggtcttttacctcct
agtgtgctaaaaggtgataaaggctttcctggccaacctggactacctggtccacctgga
actccagggtttcagggaccaatggggccacaagggcctccaggagatccaggtccccca
gggccaccaggactgccaggcgagaagggctacatgggcttgggctttcagggtcccaaa
ggtgaaaagggagaacaaggggtaaggggccccccaggccccccaggaccagcaccacat
atgaaagaaaaagggagtgaaatcataaggggagaaaagggtgatccaggtgaaaagggt
gaacagggagtcccgggattgccaggttcaggtttcaaaggagaaaagggtgaacctggg
aagcctggtccacgtggaaagcctggaaaagatggtgatccaggaccaaaaggagaaccc
ggtttgcctggtggatttgggattccaggacgacccggggagcctggtacaaagggtgac
aaaggtgaacgaggttttccaggacctccaggaagagttatagatcctggaccggtagat
acctttggtgaaaaaggagagcctggagcttcaggtttgcctggtctgaaaggtcaaaaa
ggtgaaaaaggtttccctggtatacaaggaattccaggacctccaggtcgaccacttcca
gacagggtaggatcacctggtgtgcctggagagagaggtgaaaaaggtgaaaagggttct
ccgggattcgctttacccggaccccctggaagagatggtttcccaggtcccccagggttg
cctggcccaccaggtcctccaggcaaaacagatggaatcgatcaatgccaacagggagaa
cctggtgcaccaggtagtcctggacttccaggaagagatggatttccaggagagatggga
gagaaaggtgacaaaggtgaagcctgtgccttatgtgataaagtaggacctcctggactt
ccaggaccacaagggccaccaggtccatcaggttttccaggacaatcgggtttcaagggt
gacagaggcttacctggacttgatggccttccaggggtacctggcccccccggcactcca
ggacttatgggcagccctggggcaaaaggagaaccaggagatttttcttatgattctatc
ctgaaaggtgaaaagggagatcctggtttcccaggacaaccaggtactcctggaagagaa
ggaagaccaggaaaagatggattgccaggtctccagggtccaaaaggagcagcgggtaca
gctggcttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggt
gaaagaggttttcctggccctcctgggataggtgctgcagggttacctggtgacaaagga
gacagaggctttgctggaaccccgggtttaccaggccttccaggagcaaaaggtgaagca
ggacgaactgtaccactccccggacctcctggggcggatggccttcctgggccacctggt
ttccctggaccccaaggtgacaaagggaaccctgggcttccaggtagacctggcctgcca
ggagaaaaaggtgctgttgggcagccaggtataggattccctggacctccaggacccaaa
ggtttcccaggtcagcctggctctcctggtctgccggggactccaggaacgcctggcctg
gatggtttgccaggtgtaccaggtttacaaggtcaaaaaggtgaacctggtgtaggtctc
cctggccctaagggattgccaggcccccccggcccagctggcatccctggagaaaaggga
aatccaggactgcctggcttacgtggtgagcaaggctttccaggaatacctggacagcaa
ggattcagaggcaatcctggcctcccaggactgcaaggcttgcagggccctccgggcgca
ccggggctgggcccacagggatcaccgggacccgttggacaaccgggaccccagggaccg
ccaggatttcctggaataaaaggagaaaggggcttccctggtatcccaggtctagatatg
ccaggaccaaaaggggataaaggtagccagggccagcccggagtaccagggtctgtgggg
ttacccggcctgccgggtccgcagggagccgtcggactgaaaggatcagcaggacccaaa
ggagaaatgggagttatgggaactcctggattgccaggaactcctggaccagttggagat
cgagggttgcctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggt
gatcctggtgtcaagggagataaaggtgaagctggtctcccaggaaaacctggaacgatg
gacaccatggacatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggac
cacggagcaacaggagaaaaaggattacgtggggaatatggagaaccaggaattccaggg
aaggatggtgaacctggtactccaggacatccaggaccaaaaggtgatcaaggccctcca
ggatacccgggggatccaggaattccaggacagaaaggatcagttggtgaaatgggttta
ccaggaacacctggagaaaagggtctgccgggagtaccaggttcaccaggcacgccaggg
ttccctgggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggc
tttccagggtctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatct
ggagataagggtgaaaagggtagtgcaggannatnnnnnnnnnnnnnnnnnnnnnnnnnn
naaggatcccctggcatggcaggatttccaggcaaccccggccgccatggagaaaagggt
gaaaaaggacttcctggcttaagtggcattccaggtttaaaaggagaaccaggtgaacct
ggcgttccgggtcctgctggttccattggacagaagggtgaaccgggttatgatgggatt
ccaggtgcagctggtgcaaagggtgaacaaggtgttccaggtagaggacttccaggattt
cctggtgcaaagggagacaaaggtgcaaaaggtgatgtgggttttccaggatccccaggg
agtccggggatcccaggtctgaaaggagaaccaggatatgctggtccaccaggccctaaa
ggcagccaaggtcttcctgggctaccaggaagtgcaattgagggccctaaaggagacaga
ggaccccaaggccaacctggccttccaggtttacctggtccgacagggccaccaggaccc
ccaggactgaaaggggccaaaggagagcagggaagcaatggctggcctgggactcctggg
agtccgggagtcaaaggtgatccaggtttccagggactgccaggtagtcctggtctacca
ggagatattggtcaaaagggtgatctaggacctccaggagttccaggtgttccaggcccg
aaaggatctcctggcttcccaggccttaagggtgagcgaggtgaccaaggccttcctgga
tctaaaggtttacaaggccccccaggccccccgggtgcttttcagcttgttaaaggtgat
cctggcttacctggccctgtagggccagttggtctcaaaggattcccgggacttccaggt
cccaaaggacagcaaggggtgacaggaccttcaggtgtacctggaccacctggtagtcca
gggtttgatggtaaacctgggcaaaaaggagaagttggtccttatggtcccccagggccc
agaggattccctggtccacctggccctgaaggtttgcctggagctatgggcccaccaggt
gcaccatctgttgctcatggcttccttgttaccagacacagtcaaaccactgaagaacca
tcatgtccatttggaacaagactgatttaccatggctactccttgctttatgtacaaggc
aatgaaagagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaatttagt
accatgcctttcctattctgcaatatcaacaacgtatgtaactttgcatcaaggaacgac
tattcctactggctgtccactcctgaacccatgccaatgaatatggctcccatcactggt
gataacatcagaccattcatcagcagatgctcagtgtgtgaagctcctgctatggtaata
gctgttcacagtcaaacaattcaaataccatcgtgtcctgaaggctggagttcactttgg
attggttactcctttgtcatgcacaccagtgctggtgcagagggctctggccaggccctg
gcgtctcccggttcctgcctggaggagtttcgcagcgctcccttcattgaatgccatggc
cggggcacctgcaattactatgcaaatgcttacagcttctggcttgccactatagagagg
aatgagatgttcaagaaaccgactccctcaactttgaaggcaggggatctgcgctcgaat
gttagccgttgtcaagtctgtatgagaaaaacataa
DBGET
integrated database retrieval system
