Leptosomus discolor (cuckoo roller): 104353357
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Entry
104353357 CDS
T08399
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ldi
Leptosomus discolor (cuckoo roller)
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ldi03041
]
104353357 (YTHDC2)
Enzymes [BR:
ldi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104353357 (YTHDC2)
Spliceosome [BR:
ldi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104353357 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_C
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
Ank_4
ATPase
AAA_16
AAA_7
AAA_23
PhoH
AAA_29
SRP54
Sigma54_activat
ResIII
Motif
Other DBs
NCBI-GeneID:
104353357
NCBI-ProteinID:
XP_009958574
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MICCLAPSTKHTIRSLIQRFPVRNKERTELLPKTERGNACAVECENKEVNKLSGRLNNGI
PQVPVKRGESEFDSFRRSLPVFEKREEIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDC
YKNGTPCRVFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNG
VLLRTLMAGDSSLSTVTHIIVDEVHERDRFSDFLLIKLRDLLQTQTNLKLIISSAALDAN
LFVRYFGSCPVIHIQGRPFEVKEMFLEDILRSTRYTNEEMVKYKTEKQREEKQQSTLTAW
CSAQENSSKLESRRQRSVPSATEEYNLLDDGGDTVFNQLAEKDAHCLEPWVIKEMNSCLS
DIWLHKDIDSFAQVFHLILTENVSVDYRHSETSVTALMIAAGRGFLSQVEQLISMGASIH
CKSSNGWMALDWAKRFGQTEVVDLLESYSASVEFGNLDESSLVQTSGSDLSAEDRELLKA
YHHSFDDEKVDLDLIMHVLYNICQSYDAGAVLIFLPGYDEIVSLRDRILFDDKRFADNAH
RYQVFMLHSNMQTSDQKKVLKRPPSGVRKIILSTNIAETSITVNDVVFVIDSGKMKEKSF
DALSCVTMLKMVWISKASAIQRKGRAGRCQPGVCFHLFSRLRFQNMLEFQTPELLRMPLQ
ELCLHTKLLAPIDCPVVEFLMKAPDPPPPLIVKNAVQMLKTIDAMDPWEDLTELGYHLTE
LPVEPHLGKMVLCAVVLKCLDPVLTIACTLAYRDPFVLPTLASQKRAAMLCRKRFTAGTF
SDHMALLRAFQAWQKARSDGWERGFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARG
GADIRDVNTNSENWAVVKAALVAGMYPNLVHVDRESLVLTGPKEKKVRFHPTSVLSQPQY
KKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVSLFCGPARLPNNSL
QEHSSFPGDGVSNDNSDSDMEDKTTANLALLKLDEWLHLRLDPEAAGLLLQLRQKWHGLF
LRRMRAPSKPWSQVDEAIVRAIVAVLSTEEQSAGLQQPSGIGQRPRPMTPEEPPLASQWN
QTNSRKSSAETEFSDSTNAEK
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgatttgttgcttggctcccagtacaaaacacactattcgcagtttaattcagaggttt
cctgtcagaaataaagaacgaacagaacttctgccaaagacggagcgaggaaatgcgtgt
gctgttgaatgtgaaaacaaagaagtgaacaagctaagtggacggcttaacaatggtatt
ccccaggttccagtgaaaagaggggaatcggagtttgattccttcaggcgatcactacca
gtttttgaaaaacgggaagaaattgtcaaaataataaaggacaataaagttgttttgatt
gtaggagagactggatcaggaaaaactactcaaatccctcagtttcttcttgatgactgt
tacaaaaatggaactccctgtcgtgtattttgcactcagccaagacgtttggcagctatt
gctgtggccgaaagagtggcagcagaaagaagagaaaagattggccagacaattggttac
cagatccgattagaaagcagggtttctccaaagacactgttaacattttgcactaatggt
gtactacttcgcacactaatggcaggagacagctctctatcaactgtgacacatattatt
gtggatgaagtacatgagagggataggttcagtgacttcttgttaataaaactgagagac
ttgttgcaaacccagactaatttaaagctaattatttccagtgctgctctagatgcaaat
ctctttgttaggtattttggaagttgcccagtaatacacatacaaggaagaccttttgag
gttaaagagatgtttttggaggacattttacgaagcactaggtacacaaatgaagagatg
gtcaagtacaaaacagagaagcagcgagaagaaaaacagcaaagcactcttactgcgtgg
tgttctgctcaagaaaatagcagcaaactggaatctcggagacaaagatctgtcccaagt
gcaactgaagagtataatctgttggatgatggtggcgacacagtatttaatcaactggct
gaaaaagatgcacattgccttgaaccgtgggtaataaaagaaatgaattcttgtctttct
gacatctggttgcataaagatattgattcctttgctcaggtgttccatcttattttaact
gaaaacgtcagtgttgattataggcacagtgaaaccagtgtgactgcgctaatgattgct
gcagggagaggctttctgagtcaagtagaacaactgatcagtatgggagcaagtatccac
tgcaaatcatccaacggctggatggctttggactgggctaaacgctttgggcagacagag
gttgttgacctgttagagtcatacagtgcttccgtggaatttggaaatctggatgaaagt
tccctggtccaaacaagcggtagtgaccttagtgcagaggacagagaactgctgaaagct
tatcatcacagttttgatgatgaaaaagtggatctggacctcattatgcatgtactttat
aacatctgccagagttacgatgctggagcggttttaatatttcttcctggatatgatgag
atagttagcttgagggaccgtattctttttgatgacaagagatttgctgataatgctcac
agataccaagttttcatgcttcattcaaatatgcagacttcggatcagaagaaggtgctt
aaaagaccgccttctggcgtccgcaaaataattctttctactaatattgcagaaaccagc
ataacagtcaatgatgttgtctttgttattgactcaggcaagatgaaagagaagtctttt
gatgcactgagttgtgttacaatgctaaaaatggtgtggatttccaaagccagtgctatc
cagagaaaaggcagggctgggcgctgtcagcctggagtctgttttcatctcttcagcagg
ctccgatttcagaatatgttggaatttcagactccagaacttctaagaatgccacttcag
gagctttgtttacacacaaaacttctggctccaattgattgtccagttgttgaatttctt
atgaaagctcctgatcctccaccgcctttaattgtgaaaaatgctgtgcaaatgcttaag
acgatagatgccatggacccttgggaagatctcactgaacttggttatcatctcactgaa
ttaccagtagagccacaccttggtaaaatggtgttgtgtgctgttgttttgaagtgcctg
gatcctgttcttaccattgcttgcactcttgcatatcgagacccttttgtcctacctacg
ctggcctctcaaaagcgtgcagccatgctgtgtagaaaacgttttactgcaggaacattt
agtgaccatatggcgcttctcagggctttccaggcatggcagaaggcacgcagtgatggc
tgggagaggggcttctgtgaaaaaaacttcctgtctcaagccacaatggaaatcatcgta
ggaatgagaacacagttgcttggccagcttagagcttcaggttttgttagagccagagga
ggagctgatattagagatgttaatactaactctgaaaactgggctgtagttaaagctgcc
ttagtggctggaatgtatcccaatctggtgcatgtagacagagaaagtctggttttgact
ggaccaaaggagaagaaagtgcgatttcatcctacctctgttcttagccaacctcagtat
aaaaagattcccccagcaaatgggcaagctgcagccattcaggcactccctacagactgg
cttatatatgatgaaatgacgagagctcacaggatagcaaatatcagatgctgttctgtt
gtgacacctgtcactgtgtcactcttctgtggaccagctagattaccaaataattctttg
caggaacattcatcctttccaggggatggggtatctaatgataacagtgatagtgacatg
gaggacaaaacaactgctaatttggcactactgaagctagacgaatggctccatctcaga
ctggaccctgaagctgctggtttgctgttgcaactcagacagaagtggcatggcttattt
ctgcgtcgtatgcgagctccttctaaaccatggtctcaagttgatgaagcaattgtaaga
gcaattgtagctgttttaagtactgaagaacagtctgcaggtttgcagcagccttcagga
attggtcagagaccaagacctatgactcctgaagaacctcctttagcatctcaatggaac
caaaccaacagtagaaaaagctcagcagaaactgaattctctgactccactaatgctgaa
aagtaa
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