Leptosomus discolor (cuckoo roller): 104354416 Help Entry 104354416         CDS       T08399                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism ldi  Leptosomus discolor (cuckoo roller) Brite KEGG Orthology (KO) [BR:ldi00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ldi03021]     104354416 (SETX) Enzymes [BR:ldi01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104354416 (SETX)     5.6.2.5  RNA 5'-3' helicase      104354416 (SETX) Transcription machinery [BR:ldi03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      104354416 (SETX) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 UvrD-helicase AAA_30 Viral_helicase1 AAA_22 SLFN-g3_helicase AAA_16 nSTAND3 Helicase_RecD Motif Other DBs NCBI-GeneID:  104354416 NCBI-ProteinID:  XP_009959633 LinkDB All DBs Position Unknown AA seq 1906 aa AA seqDB search MSTCRWCTPSGSDTTEFLKSYASKQLSPDDVEGSNDDLCYCLECVVEYHKAREKLPRLHE VLWELETSRLVAHIEKSMREEAGEDDELFIVNEDGETQLSGYVGPDFENNLRVPLLEILK YPYLLLHEKVSELCVEVLCRMEQSHNSFQVFEKYPGIYLFLVHPNEVIRRWAVLTARNLG KVDRDDYYDLQEVLTCLFKVVELGLFESPDIYSSSMIEKGKLILLPSHLYDAANYKNYWL GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSASYNNEIKNIRSSFKRTKSEPESDHSDDIVTCSQIVYN YNTEKPQKDTGWKTAICPDYCPNMYEEMQTLANVLQSDIGRDIRVHDSTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLCSEIKEILNERIQQCDKISEFFLLILVSIIELHRNKKCLHLL WISSQEWVEAVVRCTKLPAIAFTRCTEKASGHCVRGSSAVSLQASNSVQHACVQLIRSLL REGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQMCLKQVIRSIKDRALNTS VSKNEDDSILLSGISDTSVKKVSTEEKSSSLLQSALKKDTDMQTSDREQPDLNDLVKYDQ YFKRENNSVRKKEEDFAKVASEDNTLTDSQVDRELSRLSLAAYAKSVNFPFDSSQESSVH HNVCDIKRKVKGAEDCGSQYFEFETEGDVFSVWEDTQAYIMEATQEYKQDRVSASASMPA VVPPRKVRQCPAPTSIVEKLGLKKAPRKAFELSQRSSESLAQLRSHGKAAGRVGVPLKRK TKEIAPQSLFIKHNKKFLACQDRQYLRQSRPKKSENSEDDDDDDLFLTQLDPVDMELCSQ EESVQDTTIASKKPEDMDTAENLQQNESFPIDKCKYKDCTEKVEKPGECCSKHSATSSEA DHLFAKPLLPPSKTRKPSTTKIFSSTSSSRNAAFSKDLEDVKKPPPASKSKVNAAKLVRD HSIFVNEVLKWTYEMFASSQFGPPSNLLQSVVASVPVQFQGYNDYFNTFFPLMMLNAFET LAQDWIEHQRVKEKSYYFYLQNFCADLNTADFTAHFQESDLARQLHPKEDDLIFLVVQKK KDTFREESEMENHMVNHVGLVTRFSSASGCLTRQKEQHTVCHLSVQTRGNLSFFINKQVK CVVVGSLVTVHRTFKGLLLLSRSPLAKPIINPSYNDFCPRDLPMASERCAASYMNEYNED QKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSKTIVGLLCRVLRENTRNEKTRRPNSKI KPNRFLVCAPSNAAVDELMKKIIVAFKEKCQNRQEPLGNCGDIKLVRLGAEKAINSEVRG FSLDKQVEHRMKRKPADCDQDIQKRKAALDQKLDMLSRERARHRCGKRESQMLDDEIGKL SKERQQLASRVKEVRGHSQKVQADIILESDIICCTLSTSGGGLLESTFLRQGLDPFSCVI VDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTVKSVKAQEYGYDQSLMARLHRHLEE QVQKNVLRSLPVVQLTVQYRMHPDICHFPSNYIYGRTLKTDRATEESRCSSEWPFQPYLI FDVADGCEERDNDSFSNPQEVKLVMEVIRTIKEKKKDLGFRRLGIITPYSAQKKKIQEQM DRVFRNNSPGEVDTVDAFQGREKDCIIVTCVRANNTKGSIGFLASLQRLNVTITRARFSL FILGRLETLMENGDWNELIQDAHKRGAIIKTSEENYKRDAVKILKLRPTWQHKLQIKAYE VCLVPEAKSRSSRAQSWAWRQPSPFCRGRRRLAGAPVNPDHPLSAVSTLLKLLGLSLGVE YLGFTVAVFRVIAPHYCNVRPNQMCVTVVPEQSAGLPNGAFTGGEA NT seq 5721 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgtcgatggtgtacacctagtggttctgacaccactgagttcctgaagagc tatgcttcgaaacagttgtcgccggatgatgttgaaggatccaatgatgatctctgttac tgcctggagtgtgtggttgaataccacaaagcaagggaaaaattgccaaggctgcatgag gtcctgtgggagctggaaacctcccgtcttgttgcccacattgagaaatccatgcgagaa gaagctggagaagatgatgagttgtttatagtgaatgaggatggagagacacagctatct ggctatgtgggcccagattttgagaataacctgcgtgttccccttctagaaatactgaaa tacccgtatctgctgctgcacgagaaagtcagtgagctgtgtgtagaagtgctctgtaga atggaacaaagtcacaactcctttcaggtttttgagaaatacccaggaatttatctcttt ttggttcacccgaatgaagtaattcgtcgatgggctgtcctaacagcaaggaatttaggg aaggttgacagggatgattattacgacttacaggaagtgctgacttgcttgttcaaagtt gttgagttggggctttttgagagtccagatatttacagctcttccatgattgaaaagggt aaactcatccttctgccatctcatttatatgatgctgccaactacaagaactattggcta gggatttgtatgttgctaaccgtgctggaagaacaagctatggactctttgttactgggc ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagct gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc aacagtgcgagctacaacaatgaaataaaaaatatacgcagtagctttaagaggaccaaa tctgaaccggagtcagatcacagtgatgacatagttacttgcagtcagattgtgtataac tataacacagaaaagcctcaaaaggatactgggtggaagactgccatttgtccagactac tgccccaacatgtatgaagaaatgcaaacgctggctaacgtgcttcagtcggatatcggc agagatatccgtgtccatgacagcacgtttctgtggttcatcccttttgttcagtctctt atggatctcaaggacttgggtgtagcatatatagtagaagtcattcactacctctgctcg gaaatcaaagagattctcaatgaaagaatccagcagtgtgacaaaatctctgaatttttt ctcctgatcttggtgtcgattattgaactacacagaaataaaaagtgcctgcatctgctg tggattagctcccaagaatgggtggaagcagtggtgagatgtactaagcttccagctata gcatttacacggtgcactgaaaaagcatctggacactgcgtgagaggttcatcagcagta tctttacaagcttctaactctgtgcagcacgcctgtgtgcagctgatacgcagccttctt agagaaggctatcaaattgggcagcacgctctttgcaagcaatacctagacaaactcaat cttcttctgcgaggaaatctgtctttaggctggcagctgaacatccaggaaacccaggaa ttacaaatgtgtttaaagcaagttataagaagtataaaggatagagcattaaatacctct gtgtctaaaaatgaagatgacagtattttgctttcagggattagtgacacctcagtgaaa aaagtatccactgaagaaaaatcaagttcattgttgcagtcagcgcttaagaaagacacc gatatgcaaacttcagaccgggaacagcctgatttaaatgacttggttaaatatgaccag tatttcaagagagaaaacaattcagtgaggaagaaagaggaggattttgcgaaggtggct tctgaagataatactttaacagattcacaagttgatagagagctcagtagattatctcta gctgcatatgccaaaagtgtcaattttccctttgattccagccaagaaagctcagtacat cataatgtatgtgatattaaaaggaaagtgaaaggtgctgaagactgtggctctcagtac tttgaatttgaaacagaaggtgatgtcttttcagtttgggaagatactcaagcatacata atggaagccactcaggagtataaacaagatcgtgtttcggcgtcggcgtcaatgccagct gtggttcctccaaggaaagttcggcagtgtcctgcaccaacatcaattgtagaaaaactt gggctgaagaaggcaccccgcaaagcatttgagttatcccagcgctcttcagagagccta gctcaattgcgcagccatggtaaagctgcagggagagttggagttccactgaaacggaag actaaagaaattgctcctcagagtttgtttataaagcataataaaaaatttctagcctgc caagaccgtcagtatttaaggcagagcaggcccaaaaaaagtgaaaacagtgaagatgat gatgatgatgatttatttttaactcagttagatcctgtggatatggaattatgttcccag gaggagagtgttcaagatactactatagctagtaaaaaaccagaggatatggatactgct gaaaaccttcagcagaatgaatccttccctattgataaatgtaagtacaaagactgtaca gaaaaagtggaaaaaccaggagagtgctgcagtaagcattcagccaccagctcagaagca gatcacttgtttgccaaacctctcctgccaccttctaaaacaagaaagccttccactacc aaaattttcagctccacaagttcttcacggaatgcagccttcagcaaggatctcgaagat gttaaaaagccaccaccagcttcaaaaagcaaagtgaatgcggcgaaactggtgcgtgat catagtatttttgttaatgaagtcctaaaatggacttacgaaatgtttgcaagcagccag tttggacctccaagtaatctcctgcagtccgtagtagcctctgttcctgtccaatttcag ggatacaatgactattttaatacatttttccccttgatgatgctaaatgcctttgaaaca ctggcacaagactggatagaacaccagagggtaaaagagaagagttactacttctactta cagaacttctgtgctgacttgaatacagcagattttacagctcattttcaagaaagtgat ttggcaaggcaacttcatccaaaggaggatgacttaatctttttggtggtccaaaagaaa aaagacacgtttagggaagaaagtgagatggagaaccacatggtgaatcacgttggtctt gtgacacgattttcttctgcgtctggctgtttaactagacaaaaggagcagcatactgtc tgtcatctttctgtgcaaactcgaggcaatttgtcattcttcataaataagcaagtgaag tgtgtggtggttggctccctggtgaccgtacaccgaacgttcaaaggtctgctgctattg agcaggagtcccctggctaaacccatcataaatccaagctacaatgacttctgtcccaga gatttgcccatggcttcagaaagatgtgctgcatcgtatatgaacgaatataatgaagat caaaagagagccattgagacagcttatgccatggtaaagcaacatcctgggcttcccaag atctgcctcatccacggacctcctggaacagggaaatcaaaaactattgttggacttttg tgtcgtgttttgagagaaaacactaggaatgagaaaacgcgaagaccaaattccaagatc aagccaaaccgttttctagtttgtgcaccctcaaacgctgctgttgatgaactcatgaaa aagatcatcgttgcatttaaggaaaaatgccaaaacagacaggagcctttgggaaattgt ggtgatatcaaattagtgcgacttggtgctgaaaaagcaatcaacagcgaagtccgggga tttagcctggataagcaggttgaacataggatgaaacgaaagccagctgactgtgaccag gatattcagaagagaaaagcagctctggatcaaaagctagacatgctgtctcgtgagcgt gccaggcacagatgtgggaagagggagagtcaaatgttagatgatgaaattggcaagctt tcaaaggagagacaacagcttgcttctcgagtaaaggaggttcgggggcactctcagaaa gtacaggcagatatcatcttggagtccgacatcatctgctgcacactgagcacaagtgga ggaggtctgctggaatctacctttctgcggcaaggacttgatcctttcagctgtgtcatt gtggatgaggcagggcagtcctgtgaagtggaaacgctgattccactgatccatcgctgt aacaaactcgtccttgttggagatcccagacagcttcctcctacagtaaaatcagtgaaa gctcaggaatacggctacgatcagtccttgatggcccgcctgcacaggcacctggaggag caagtgcagaagaacgttttgcgaagcctgcccgttgtgcagctgactgtgcagtacagg atgcaccccgacatctgccacttcccctccaactatatttatggcaggactctgaagact gacagagcaacagaagagagcagatgttcttcagaatggccattccagccctaccttatt tttgatgtagcagacggttgtgaggagcgagacaatgactcttttagtaatcctcaggaa gtaaagctggtgatggaagtaattagaacaattaaagaaaaaaagaaggatctgggtttt cgtcgcctcggaataattaccccttacagcgcacagaaaaagaaaattcaagaacaaatg gacagagtgtttaggaataacagcccaggagaagtggacacagtggatgcattccaggga cgtgagaaagactgcatcatagtgacgtgtgtccgggcaaacaacactaaagggtcaatt gggtttctggcgagtcttcagcgtctgaacgttacaattacccgagccagattcagcctc ttcatccttggaagactggaaacgcttatggaaaatggggactggaatgagttgattcag gatgctcataaaagaggtgccattatcaagacatcagaagaaaactacaagagagacgct gttaagattttgaagctcaggccaacatggcaacacaaactgcagattaaagcctacgag gtctgtttggtcccagaggcgaagagccgcagttcacgtgcgcagagttgggcgtggaga cagcccagccccttctgccggggcaggcggcgcctggctggtgctccagtgaaccctgac caccccttgtcagcagtgtccacccttctgaagctgctgggcctgtcccttggtgttgag tacctcgggtttactgtcgccgttttccgtgtcattgctccccattactgcaacgtgaga ccaaaccagatgtgtgtgacggtggtacccgaacagagtgccggcttaccgaatggggcc ttcaccggtggtgaggcctga

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