Leptosomus discolor (cuckoo roller): 104354831
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Entry
104354831 CDS
T08399
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03013
Nucleocytoplasmic transport
ldi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104354831 (UPF1)
03015 mRNA surveillance pathway
104354831 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldi03019
]
104354831 (UPF1)
Enzymes [BR:
ldi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104354831 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104354831 (UPF1)
Messenger RNA biogenesis [BR:
ldi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104354831 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104354831 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104354831
NCBI-ProteinID:
XP_009960155
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaacgggcccgatggcattctgcagaacggagctgtggatgataacgtggctaaaacc
agccagcttctggcagagctgaattttgaagaagatgaagaagatacttactacacaaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacaccagcaaaaagtggttctgtaacgggcgtggaaatacatctggcagccacatt
gttaatcaccttgtgagagcaaagtgcaaagaggtgactctccataaagatggacctcta
ggagagacggtcttggagtgttataactgtggatgtcgtaatgtgtttctccttggcttt
attcccgctaaggcagactctgtggtggttttgctgtgcaggcagccatgtgccagtcag
agcagtttaaaggatattaattgggacagttcacagtggcagcctcttatccaagatcgt
tgtttcctttcgtggctggtaaagattccatctgaacaggagcagctgagagcacgtcag
attacagcccagcagattaacaaactggaagaactgtggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgttgatgaggaaccacagcatgtcctgcttagatac
gaagatgcttaccaataccaaaatatatttggtcctctggtcaagcttgaggcagactat
gacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtataaaggggacctggcccctttatggaaaggg
attggtcatgttatcaaagttcctgataattatggtgatgagatagccattgagctgagg
agcagcgttggagcgcctgtggaagtcactcataacttccaagtggatttcgtatggaag
tctacttcatttgacagaatgcagagtgctttgaaaacgtttgctgtggatgagacttca
gtgtctgggtacatctatcacaagctgttaggtcacgaggtagaagatgtaatcattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttatccagggtccccctggtacg
ggaaaaacagtgacatcggccacgatcgtctatcacctggctagacagggcaacgggcct
gtgttagtctgtgctcccagtaacatagctgtggatcagttgactgagaagatccaccaa
actggactgaaagtggttcgtctgtgcgctaaaagtcgtgaggccattgactctcctgta
tccttcttggctttgcataaccagatcagaaacatggacagcatgccagagcttcagaaa
ctgcagcagcttaaagatgaaactggagaactctcatctgctgatgagaaacgctaccgt
gcgctgaaacgaacagcagagcgtgaattgcttatgaacgcggacgtgatctgttgcacg
tgtgtgggagccggcgatccgagactggcaaaaatgcagttccgctccattctgattgat
gagagcacacaggctactgagccagagtgcatggtgccggttgtcctgggagcaaaacag
cttattctggtgggtgaccactgccagctcggccctgttgtgatgtgtaaaaaagccgcc
aaggctggcctgtcccagtctctcttcgagcggctggtggtgctggggattcgtccgatt
cgcctgcaagtgcagtaccgcatgcaccctgccctgagcgctttcccttccaacatcttc
tacgagggctcactccagaacggcgttactgcagcggaccgtgtgaaaaaaggttttgat
ttccagtggccacagccagataagccaatgtttttctatgttacccaaggacaggaagaa
atcgccagctcgggcacctcttacttgaacaggacggaagcggccaatgtggagaagata
accacaaagctcttgaaagctggtgccaaaccagatcagattggcattattaccccttat
gaagggcaacgatcctatctggtgcagtacatgcagttcagtggctccttgcatacaaag
ctctaccaggaagtggaaattgcaagcgtggatgccttccagggacgagagaaggacttt
attattctttcttgcgtgagggccaatgaacaccaaggaatagggtttctgaatgacccc
aggcgtcttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaaccca
aaagcgctgtctaagcaaccgctttggaatcacctgctgaattactacaaggagcagaag
gttctggtggagggaccactgaacaacctccgggaaagcctcatgcagttcagcaagccc
cggaagcttgtcaataccatcaacccgggtgcccgtttcatgactacagccatgtacgac
gcccgtgaggctattattccaggatctgtctacgaccggagcagtcaagggcgcccatcc
aacatgtacttccaaacccacgaccagatcgggatgatcagtgctggtcccagccacgtc
actgccatgaacattcctatccctttcaacctcgtgatgccaccgatgccgccaccggga
tactttggccaggctaacggaccagccgcaggacgtggggcgccaaaaggaaagactggt
cgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttcca
aatagtcaagcgagccaagacgtggtgtcccagcctttctcccagggtccactgactcag
gggtatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaacccgaa
ttatcccaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
