Leptosomus discolor (cuckoo roller): 104355042
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Entry
104355042 CDS
T08399
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104355042 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ldi03041
]
104355042 (DHX38)
Enzymes [BR:
ldi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104355042 (DHX38)
Spliceosome [BR:
ldi03041
]
Complex C
Other components
Step II factors
104355042 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
SRP54
PhoH
Microtub_bd
AAA_16
SoDot-IcmSS
AAA_7
DUF6449
AAA_30
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
104355042
NCBI-ProteinID:
XP_009960428
LinkDB
All DBs
Position
Unknown
AA seq
902 aa
AA seq
DB search
MMDEGYDEFHNPLAYSSEEYVKKREQHLHKQRQKRISAQRRQINEDNERWETNRMLTSGV
VHRIEVDEDFEEDNSAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKG
SQLVRKHREQKERKRAQHKHWELAGTKLGDIMGIKKEEEKDEMVTEDGKVDYRTEQKFAE
HMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLSILRDNSIVIVVGETGSGKTTQLTQ
YLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGVRLGEEVGYAIRFEDCTSENTVIKY
MTDGILLRESLREADLDNYSAIIMDEAHERSLNTDVLFGLLREVRVVARRSDLKLVVTSA
TMDADKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQVHLSGAPGDILV
FMPGQEDIEVTSEQIVEHLEELEKAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVAT
NIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRAGRAGRTGPGHC
FRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMY
QLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFY
RPKGREEESDQVREKFAVPESDHLTYLNVYLQWKNNSYSTLWCNQHFIHAKAMRKVREVR
AQLKDIMVQQRMSLASCGTDWDVVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTS
SLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRA
KEEVSAMEEEMALAEEQLRARREEQERRNPLGSARSTKIYTPGRKEQGEPLTPRRTPARF
GL
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagggctacgacgagtttcacaaccccttggcctactcctcggaggagtac
gtgaagaagcgggagcagcacttgcacaagcagaggcagaagcgcatctcggcgcagcgg
cggcagatcaatgaggataacgagcgctgggagactaaccgcatgctgaccagtggtgtg
gttcatcgcattgaagtggatgaagattttgaggaggataactctgctaaagtgcatctg
ttggtgcacaacctggtgccccccttcttagatggaaggattgtcttcaccaagcagcca
gagccagtcatccctgtcaaggatgccacctcagatttggccatcatagcccggaaaggt
agccaactggtgcgcaagcacagggagcagaaggagcgtaagagggctcagcataaacac
tgggagctggcaggcacaaaactgggagatattatggggatcaagaaagaggaggagaag
gacgagatggtgacagaagatggcaaagtggattacaggactgagcagaagtttgctgaa
cacatgaaagaaaaaagtgaagccagcagtgagttcgccaagaagaaatcaatcctggag
cagagacaatacctgcccatctttgctgtgcagcaggagctgctctctatcctcagagac
aacagcattgtgattgtggtgggggagacggggagtgggaagacgactcagctgacacag
tacctccatgaggatggctacacagactacggcatgattggctgcacccagccccgcagg
gtggcggccatgtcggttgccaaacgggtcagtgaagagatgggggtgcgtctgggcgag
gaggtgggctatgccatccgctttgaggactgcacgtccgagaacacagtgatcaaatac
atgacagatgggatcctcctccgtgagtcactgcgagaggctgacctggacaactacagt
gctatcatcatggacgaggcgcatgagcgctcgctcaatactgacgtgctcttcgggctg
ctccgggaggtgcgtgtggtggcccgacgctcagatctgaagcttgtcgtcacctcggcc
accatggatgcagataagtttgcctccttctttgggaacgttcctattttccacattcct
gggcgcactttccctgtggatattcttttcagcaagaccccacaagaggattatgtggag
gctgcagtgaaacaagccctgcaggtccatttgtccggtgcccccggagacatccttgtc
ttcatgcctggccaggaggacatagaggtgacctcagagcaaattgtggaacacctcgag
gagctggagaaggcgcctgcccttgctgtactgcctatctattctcagctgccgtcggac
ttgcaggccaagatcttccagaaggctccagatggggtcaggaagtgcatcgttgccact
aacatcgcagagacctcgctgacagtggacggcatcatgtttgtgattgactctggctac
tgcaagttgaaggttttcaacccccgtataggcatggatgcgctgcagatctaccccatc
agccaggccaatgctaatcagagggcaggccgagctggccgaacaggcccagggcactgc
ttcaggctctacacccagagtgcctacaagaacgagctgctgacaaccacggtgcccgag
atccagcgcaccaacctcgccaatgtagtgctcttgctcaagtccctgggtgtgcaggac
ctgctgcagttccacttcatggatccgccccccgaggacaatatgctgaactccatgtac
cagctgtggatcctgggggccctggataacacaggtggattgacctcaacaggacgtctc
atggtggagttcccgctggatcctgcgctctccaaaatgctcattgtctcctgcgacatg
ggttgcagctctgagatcttgctcattgtctccatgctgtctgtgcctgccatcttttat
cggcctaagggccgagaggaggagagcgaccaagtgcgggagaaatttgctgttcccgag
agtgatcacttgacttacctgaatgtctacctgcagtggaagaacaacagctattctacg
ctgtggtgcaaccagcatttcatccatgccaaggccatgcggaaggtgcgcgaggtgcgt
gcccagctcaaggacatcatggtgcagcagcggatgagcctggcatcctgtggcactgac
tgggatgtcgtcaggaagtgcatctgtgctgcctatttccatcaagctgcaaagctgaag
ggcattggggagtacgtgaacatccgcacaggcatgccctgccacctgcaccccacgagc
tccctgtttggcatgggctacacaccggactacattgtgtatcacgagttggtcatgacc
accaaggagtacatgcagtgtgtcactgctgtggatggagagtggctggcagagctggga
cccatgttctacagtatcaagcatgctggcaagtcacgccaggagaaccgccggcgtgcc
aaggaggaagtgtctgccatggaggaagagatggctttggctgaggagcagctgcgtgcc
cgccgggaggagcaggagcgccgtaacccactgggcagcgcaagatctactaaaatctac
acccctgggcggaaggagcagggagagcccctgacgccgcgacgcaccccagcccgcttt
ggcctttaa
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integrated database retrieval system
