Lactobacillus delbrueckii subsp. bulgaricus 2038: LBU_0697
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Entry
LBU_0697 CDS
T01957
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ldl
Lactobacillus delbrueckii subsp. bulgaricus 2038
Pathway
ldl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBU_0697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldl03019
]
LBU_0697
03400 DNA repair and recombination proteins [BR:
ldl03400
]
LBU_0697
Enzymes [BR:
ldl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBU_0697
Messenger RNA biogenesis [BR:
ldl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBU_0697
DNA repair and recombination proteins [BR:
ldl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBU_0697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
ADY84882
LinkDB
All DBs
Position
696609..698378
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AA seq
589 aa
AA seq
DB search
MLDPQQVLKKYFGYDSFRPGQREIIEKVFQGKNVLAVMPTGGGKSLCYQIPALMIPGATV
VISPLISLMKDQVDSMREYGIPAAALNSSTAQEDVNPILRACYEGKIKLLYVTPERMEMD
YFRYQLNFLEVNLVAIDEAHCISQWGHDFRPAYRKLKDGINALHTHPNVLALTATATKAV
REDIGQQLDISEENFVITSFERKNLHFKLVNAPKNSRAYIVNYLKQHRGEAGIIYSNTRK
KVEGLTEFLRREGFNVAAYHAGMSNEERAQVQDDFQYDRIPLIVATNAFGMGIDKSNVRF
VLHANSAKNLEAYYQEAGRAGRDGLESEAVMLFHPSDLRQFRWFIDNSEADESYRQVQYQ
KLQTISDYANTDECLQQFIVRYFGQDCPPCGKCSNCLNSGDFQDVTAEAQAIIGMVYDLD
GRYGKRIVAQAVTGSKVKKISEIGADECVHYGLLKGKKQADVSSLVDYLVSKGYLKLVGD
CYPLVHVTNRGWDVLDGKARVKRRQEVKSEQLAETGGDQVLFEELRKARRILAQKRGVPP
FVIFSDLSLRDMAARKPQTPEELLQCSGVGDAKLANYGKAMLAVIKKYG
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgatccacagcaggtcttaaagaagtattttggctatgacagtttccggccgggc
caaagagaaattattgaaaaagttttccagggaaaaaatgtcctagcagtcatgccgacc
gggggcgggaagtcgctttgctaccagatcccggccttgatgattcccggtgcgactgtg
gtgatctcacccttgatctccttgatgaaggaccaggttgacagcatgcgcgagtacggg
ataccggccgcggcacttaacagctccacagcccaggaagacgtcaatcccatcttaaga
gcctgctatgaagggaaaatcaagctgctctacgtgacgccggaacggatggagatggac
tatttccgctaccagctcaactttttggaggttaacctggtcgccatcgatgaagcccac
tgcatttcccagtgggggcatgacttccggccggcctaccggaagctaaaggacgggatc
aatgcccttcatacccatcccaatgttctggcccttacagctacggccactaaggcggtc
agagaagacatcggccagcagctggacatttccgaggagaatttcgtcatcaccagtttt
gaaagaaaaaatctccacttcaagctggtcaacgcgccgaaaaacagccgggcctatatc
gtcaactacttgaagcagcaccggggtgaggcgggcattatttattccaacacccggaaa
aaggtggaggggctgaccgaatttttgcgccgggagggctttaacgttgccgcctaccac
gccgggatgtccaatgaggaacgggcccaggtccaagacgacttccagtatgaccggatt
cccttgatcgtggctacgaatgcttttggcatggggatcgacaagagcaatgtccgcttt
gtcctgcacgcaaacagcgccaaaaacctggaggcctattaccaggaagccggccgggcg
ggccgtgacggtctggagagtgaggccgtgatgctttttcaccccagtgatcttcgccag
ttccgctggtttatcgacaattctgaagctgatgagtcctaccggcaggtccagtaccaa
aagctgcagacgatcagcgattatgccaatacagacgagtgcctgcagcaatttatcgtc
cgctactttggccaggactgcccgccctgcggcaagtgcagcaactgcttaaacagcggc
gacttccaggacgtgacggccgaagcccaggctattatcggcatggtctatgacttagac
ggccgctatggcaaaagaatcgttgcccaggccgtgactgggtccaaagtcaagaagatc
agtgagatcggggctgatgagtgtgtccactacggcctactcaagggaaaaaagcaggct
gatgtaagcagcctggtcgactacttggtttcaaagggctacctgaagctggtgggggac
tgctatcccttggtccatgtaaccaaccggggctgggacgttttggacggcaaggccaga
gtcaaaaggcgccaggaagtcaaaagcgagcagcttgctgaaacaggtggtgaccaggtc
ctctttgaagagctcagaaaggcccgccggatcctggcccaaaagcggggagtgccgcca
tttgtcatcttttccgacttgtctttgcgggatatggcagccaggaagccgcaaacgccg
gaagagctgctccagtgcagcggggtcggggatgccaaactggccaactatggaaaggcc
atgctggccgtaatcaaaaaatatggataa
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