Lactobacillus delbrueckii subsp. bulgaricus 2038: LBU_1120
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Entry
LBU_1120 CDS
T01957
Name
(GenBank) Single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ldl
Lactobacillus delbrueckii subsp. bulgaricus 2038
Pathway
ldl03410
Base excision repair
ldl03430
Mismatch repair
ldl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ldl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBU_1120
03430 Mismatch repair
LBU_1120
03440 Homologous recombination
LBU_1120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ldl03400
]
LBU_1120
DNA repair and recombination proteins [BR:
ldl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LBU_1120
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LBU_1120
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LBU_1120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
DHHA1
RecJ_OB
DUF1631
OTCace
GapR_DNA-bd
Motif
Other DBs
NCBI-ProteinID:
ADY85305
LinkDB
All DBs
Position
complement(1166912..1169188)
Genome browser
AA seq
758 aa
AA seq
DB search
MKWQERTAAPLASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMHDM
DKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMGADVHYFIPDRFKDGYGPS
LDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVHCN
YPGQAYPFDDYCGAGVAYTIARAVLEDTASEFLELAMIGTIGDMVKVSGEGHVIVKRGLE
MLNESSRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADASLAVRLLLAESPGE
AQELADQIEKLNNERKDLTQATMQAAEAQIKSRGYQKEATLTLYDPAWHEGVMGLVANKI
VEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKPFEGKSITQFGGHDFACGLSTTEE
NLNQLRRDFNQSYKAGEKAPEKVQEYDGTISPLDVDLTSVYDLAQAGPFGTDNPQPVFLL
DRPQISNFRPMRKGCSFMVGPVRAVDFDHGLNQTVLPYLRQMLVKLASNTFKGKTNVQFR
IVDLHYGQSLYAPAARIVDFRGQENLLGFADKYLLFDERNLSQAMNHFGITKEQISLAKD
NEDLSQQVVSVLDVPANEAQLNFVLAKPYRQLYLRFQLDQLPGETLPSRGNFGLVWQYFL
AHPGLKPNDYMQAAGQLGMDPDSIKFILRVFFTLDFVKMEEDRLLPKPSPTKKSLDDSAY
YRSVKAEYAFANKLRTISSDELIRYASGLANGGLQNVN
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcaagaaagaacagctgctcctttggccagtgacctggttgaggaatttcaa
cttagcccattaacggctaagttgttttctttgcggggaattgacaacgaggaaaaaatc
gactattggctccacgccagtgaaaatgacctggctgatccctttttgatgcatgacatg
gacaaggcagtcggccggatcaaccaggccctggacgagggcgaaaagatcactatttac
ggggactatgacgctgacggtatcaccgccacggccataatgacggaaatgctgaccatc
atgggggctgatgtccattacttcattcctgaccgcttcaaggacggctatgggccaagt
ttagaccgctacaaggatattgtggcagacgggacgaaattgatcatcaccgttgacaat
ggggcaaccgggattgaagaagtggcatatgcgcagtctcacggcgtggacgtgatcgtt
accgaccaccacaccttcaaggaggaaaagcccgacgcttatgccctggtgcactgcaac
tacccaggccaggcttatccttttgacgactattgcggggccggggtagcttatactatt
gcccgggcagtcttagaagacacggccagcgaatttttggaactggccatgatcgggacc
attggggacatggtcaaagtttccggtgaagggcacgttatcgttaagcggggcttggag
atgctgaatgaaagctcccggccgggcctggaggctcttatccgcaatgccggccttacc
ccggggatgattgatgaagaagacgtcggctttagcatcgctccccgtttaaacgcctgc
ggccgcctggctgatgccagcctggccgtaaggctgcttttggcggaaagcccgggcgag
gcccaggaattagccgatcagattgaaaagctgaacaatgagcgaaaagacctaacccaa
gcgaccatgcaggcggctgaggctcaaattaagagccggggctaccagaaagaagcgaca
ttgaccctgtatgacccggcctggcatgaaggggtcatgggcttagtcgccaacaagatc
gtggaaaaataccacaagccaaccttgatgctgacgaaaaacgaggccggcctggtcaag
gggtctggccggtccagccagggcttcaacttgttcaatgccttgaagccttttgaaggc
aagtccatcacccagtttggcggccacgactttgcctgcggcctgtcgacgactgaggaa
aatctgaaccagctcaggcgtgactttaaccaaagctataaggcaggggagaaggctccg
gaaaaggtccaggaatatgatggcacgatcagtccattagatgttgatttgaccagcgtt
tatgacctggcccaggccgggccttttggcacggacaacccccagccggtctttttgctt
gacaggccgcagatctctaacttccgccctatgcggaagggctgcagtttcatggtgggc
ccggtcagagcggtggactttgaccacggcttaaaccaaactgtcctgccttatttgcgg
cagatgttggttaagcttgcttctaacacttttaaaggcaagaccaatgtccagttccgg
attgttgacctgcattacggccagtccttgtacgcgccagccgcccggattgtggacttt
cgcgggcaggagaatttgctgggttttgcggacaagtatctcttatttgatgagagaaat
ctcagccaggccatgaatcattttggcataactaaagagcagatttccctggccaaggac
aatgaagacctcagccagcaggtcgtgtcagttcttgacgtgccggccaatgaggcccag
ctgaactttgtcctggccaagccttaccgccagctctacctacgctttcagttggaccag
ctaccaggggagaccctgcccagccggggcaacttcggcctggtctggcagtacttttta
gcccacccgggactaaaaccgaatgattacatgcaggctgccggccagctggggatggat
ccggacagcatcaagtttattttgagggtgttttttacccttgattttgttaaaatggaa
gaggacagattgctccctaaaccgagtccgacaaagaagtctttggacgattcagcctat
taccggtcagtgaaagcagaatatgccttcgctaacaaattacgaacaatctcttcggat
gaattaattcgctatgccagtggtctagcaaatggaggattacaaaatgtcaattga
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integrated database retrieval system
