Leishmania donovani: LDBPK_211820
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Entry
LDBPK_211820 CDS
T02289
Name
(RefSeq) RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ldo
Leishmania donovani
Pathway
ldo03013
Nucleocytoplasmic transport
ldo03015
mRNA surveillance pathway
ldo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LDBPK_211820
09122 Translation
03013 Nucleocytoplasmic transport
LDBPK_211820
03015 mRNA surveillance pathway
LDBPK_211820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_211820
03041 Spliceosome [BR:
ldo03041
]
LDBPK_211820
Enzymes [BR:
ldo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LDBPK_211820
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LDBPK_211820
Spliceosome [BR:
ldo03041
]
Complex C
Other components
EJC/TREX
LDBPK_211820
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
LDBPK_211820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
EH_Signature
Motif
Other DBs
NCBI-GeneID:
13386536
NCBI-ProteinID:
XP_003860699
UniProt:
E9BFG8
LinkDB
All DBs
Position
21:complement(637877..639430)
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AA seq
517 aa
AA seq
DB search
MHVCLHPRSLGGGAHTRTPTRHRLSRRYLRTKRTTVARTRRIREQPATALRTPSNVTPSP
TTPPALYPFFLPSHLCHLHCAIMSSDLADFDGDDVRTTVVAAQPMGVGMGTHSAVALGGF
QDFCLKSELANAIRENGFEHPSEVQHQALPKAMLGADILAQAKSGMGKTAVFVFALLEQV
EKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFFGGIPEDENVKQLKK
EVPAIIVGTPGRMKALIQNKAFDTTHVKWFVVDEFDRCLEDVKMRRDVQEIFMKLPKEKQ
VMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYMNVTEPEKTRRLAEILD
VVEFNQAIIFTSSVERCEALNRQLQQMKFPSQAVHSRMSQEERLRVYESCKANNTRIMVA
TDLFGRGVDFDRINLVVQYDMASEADSYLHRVGRAGRFGTKGLTIAFITTDEKEIKRENR
TYTDGGIMKEVQERFEMKVEELTDINTQLNENQYMNK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtatgtcttcatccccggtcccttggtgggggcgcacacacgcgcacgccaacg
cgccaccgcctgtcacgtcgttacctacgcacgaaaagaaccaccgtagccagaacgaga
agaataagagaacaaccagcaacagcactacgaacaccttcaaacgttacgccgtcgcca
acgacccctcccgccctctacccctttttccttccgtctcacttgtgccatcttcattgt
gcgataatgagcagcgatcttgcggacttcgacggcgatgatgtcaggaccaccgtcgtg
gcggcacagccgatgggcgtcggaatgggcacccacagcgccgtcgctctcggtggcttc
caggacttctgcctgaagagcgagctcgcgaacgccatccgcgagaacggcttcgagcac
ccgtcggaggtgcagcaccaggcgctgcctaaggcgatgctcggcgctgacattctcgcc
caggcgaagtcgggtatgggtaagacggccgtcttcgtctttgcgctgctggagcaggtg
gagaaggtgccgcagggacagaagccgtactgccaggccgtcgtgctggtgcacgcccgc
gagctggcctaccagatcgagcaggagttcaagcgcttcagcaagtacctcccgtacgcc
accaccggcgtcttcttcggcggcattccggaggacgagaacgtgaagcagctgaagaag
gaggtgccggcgatcatcgtcggcacgccgggccgcatgaaggcgctcatccagaacaag
gcctttgacacgacgcacgtgaagtggtttgtggtcgatgagttcgaccgctgcctagaa
gacgtgaagatgcgccgtgacgtgcaggagatcttcatgaagctgcccaaggagaagcag
gtgatgatgttctctgccacgatgacggatgagctgcgcgatgtggcgaagaagttcatg
aaggacgcgacggagatttacgtggatcagcgggcaaagctgaccctgcatggcttggcg
cagttctacatgaacgtcacggagccggagaagacgcgccggctggcggagatcctcgac
gttgtggagttcaaccaggcgatcatcttcacatcctcggtcgagcgctgcgaggcgctg
aaccgccagctgcagcagatgaagttcccgtcgcaggccgtgcactcccgcatgagccag
gaggagcgcctgcgcgtgtacgagagctgcaaggcgaacaacacccgcatcatggtcgcc
accgacctcttcggccgcggcgtcgacttcgaccgcatcaacctcgttgtgcagtacgac
atggcctccgaggctgacagctaccttcaccgagtcggccgcgccggccgcttcggcacg
aagggattgacaatcgccttcataacgacagacgagaaggagatcaagcgcgagaaccgc
acctacacggatggcggcatcatgaaggaagtgcaggagcgcttcgagatgaaggtcgag
gagctgacggacatcaacacccagctgaacgagaaccagtacatgaacaagtaa
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