Leishmania donovani: LDBPK_231950
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Entry
LDBPK_231950 CDS
T02289
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ldo
Leishmania donovani
Pathway
ldo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LDBPK_231950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_231950
03041 Spliceosome [BR:
ldo03041
]
LDBPK_231950
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
LDBPK_231950
Spliceosome [BR:
ldo03041
]
Complex B
Other components
Prp19-related factors
LDBPK_231950
Complex C
LDBPK_231950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
Suf
NRDE-2
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
13390525
NCBI-ProteinID:
XP_003861087
UniProt:
E9BGK9
LinkDB
All DBs
Position
23:767832..770216
Genome browser
AA seq
794 aa
AA seq
DB search
MDGDPRVSALQWEVTKEASTSPKTWAELARTTAAAAAADPVERANAVTLVYERALRAFAS
SYKLWTAYIGYRQQETSRLCGPNEWFQAVREVYERALAELPKMPMLWVGYMEFVVASEVP
RVTMTRHILARALSALPATQHHHLWKVAKRWCAMPVVPSATVRAVWRLYLSFQRSLHAKR
EYFQVLVQKGDFNGFLQECVHLGLPNKSNKGAVEERDLLLSDVSFWETVQTALQGKGWRF
TGDIGPLRELVALGKMHCASPVELSMAFAVFLYGQGHMQEGRQELRQLLDEAPEAQTLIS
LYHLAVEVEDQLVESFAVDPDLRRLDDAAYNGVVQHLFGDGDPLSHLERLAHEFPLLLNQ
AQLRNSPHNATLWLKRVELLQEDVYAGRSTFDDLVALYRQAIQQCTAGMSRVDGAAAQLF
SSCAQTLIRGGKLDSAIAVLSEGTWCVPFTSAALNVQLLGLLVEAQLMSSASPLSVRDAL
AERLTSGARSGASKRSRNGLLQSSAALPHVVHHPHAWIMWCDVCAAYDSANAAAWRRLVE
ALASSPAFSAEAACYVAHKAYICRQESVAVMMLERAVAATRQQPTAQLFVLEQYLSFLYT
RDGRQMPLHQFREVFSLVQQVTPVAIRTAPSAVIDLHVSCAYMEAAIGLYGTAVRMMQEI
SLVATAALRGRDEHLRVLQAILEHSITFTEQRRGYDSVRTYCGVLVQRLQHALLLQRVAL
HWAAIEKRSGNTAQAHLILDACGDSQDPSTEHGEVYWRLWESLCTSVEEFEKVARRRQQA
LIRFSKREGAKGVE
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgacccgcgcgtgagcgccctacaatgggaggtgaccaaagaggcctcgacg
tcgcccaagacgtgggcggagctggcccgcaccaccgctgcagccgccgcggctgatccc
gtggaaagggcgaacgcggtgacgctagtgtacgagcgcgccttgcgtgcgttcgcctcc
tcctacaagctgtggacggcctacattggctatcgccagcaggagaccagtaggttgtgc
gggccgaacgagtggttccaagcggtgcgcgaggtgtacgaacgggcgttggccgagctt
ccgaagatgccgatgctctgggtcgggtacatggagtttgtcgttgcctctgaagtgccg
cgtgtgacaatgacgcggcacatactcgcgcgcgccctgtccgcgctgccagcgactcag
catcatcatctctggaaagttgcgaagcgctggtgcgctatgcccgtcgtgcccagtgcc
accgtgcgggctgtctggcggctttatctgtccttccagcgctccctgcatgcgaagcgg
gagtactttcaggtgctcgtgcagaagggcgacttcaatgggtttctgcaggagtgcgtg
cacctggggctgcccaacaagtcgaataagggcgccgtcgaggagcgtgacctgctcttg
agcgacgtgagcttttgggaaacggtgcagacggcgctgcagggaaagggctggcgcttc
acaggcgatattggcccgctgcgtgagctggtcgctctcgggaagatgcactgcgcctcc
ccggtcgagctctcaatggccttcgccgtttttctttacggtcaggggcacatgcaagag
ggccgacaggagctgcgccagctgctggacgaggcaccggaggcccagacgctgatctcg
ctctaccaccttgccgtggaggtggaagaccaactcgtggagtctttcgccgtggatccc
gatctcagacgcctcgacgacgccgcgtacaacggtgtagtgcagcatctcttcggtgac
ggcgacccactcagccacctcgagcgacttgcgcacgagttcccgctgctcctcaatcag
gcgcagctgcggaacagcccgcacaatgcaacactgtggctgaagcgtgtggagctgctg
caggaggacgtctacgccggccgctccacctttgacgatctcgtcgctctctaccgccag
gctattcagcagtgtactgcaggtatgtcgcgtgtagacggcgcggcggcgcagctgttc
tcttcttgtgcccagaccctcattcgtggcggcaagctggacagcgccatagcggtactt
agtgagggcacgtggtgcgtgccattcaccagtgccgcgctcaacgtgcagctccttggt
cttcttgttgaggctcagctgatgtcgtccgcctcgcccttgtcagtgcgggatgcgctc
gcggagagactgaccagcggcgctcgcagtggcgcttcaaagcgcagccgaaacggcctt
ctgcagtcgagtgcagccctgccccacgtggtgcaccacccacacgcgtggatcatgtgg
tgtgacgtttgcgctgcctacgactcggccaacgcggccgcttggcgccgccttgtcgag
gcactcgccagctcgcccgctttctctgcggaagccgcctgctacgtggctcacaaggcc
tacatctgtaggcaagagtccgttgcggtcatgatgctggagagggccgtcgctgccacg
cggcagcagcccaccgcgcagctttttgtgctggagcagtacctctccttcctgtacacc
cgcgacggccgacagatgccgctgcatcagttccgcgaagtgttcagccttgtgcagcaa
gtgaccccggtcgccatacgcactgcaccgtctgctgtcatcgacctgcacgtcagctgc
gcttacatggaggcagcgatcggcctatacgggacagctgttcgcatgatgcaggagatt
tccttagtcgctactgcagcgctgcggggtcgtgatgagcacctccgtgtcctgcaggcc
attcttgagcactctatcaccttcacagagcagcgcaggggctacgattcggtgcgcacg
tactgcggggttcttgttcagcgcctccagcacgcactcctgctgcagcgtgttgcgctt
cactgggccgcgatcgagaagcgctctggcaacacggcacaggcgcatcttatcctcgac
gcgtgcggggacagccaggacccgtccacggagcatggcgaggtgtactggcgactgtgg
gaatctctctgcacaagtgtggaggagtttgagaaggtggctcggcgacgccagcaggca
ttgatccgcttcagcaaacgcgagggtgcgaagggagtggagtag
DBGET
integrated database retrieval system
