Leishmania donovani: LDBPK_280560
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Entry
LDBPK_280560 CDS
T02289
Name
(RefSeq) RAD50 DNA repair-like protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ldo
Leishmania donovani
Pathway
ldo03440
Homologous recombination
ldo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LDBPK_280560
03450 Non-homologous end-joining
LDBPK_280560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ldo03032
]
LDBPK_280560
03400 DNA repair and recombination proteins [BR:
ldo03400
]
LDBPK_280560
DNA replication proteins [BR:
ldo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
LDBPK_280560
DNA repair and recombination proteins [BR:
ldo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
LDBPK_280560
BRCA1-C complex
LDBPK_280560
NHEJ (non-homologous end-joining)
MRX complex
LDBPK_280560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_21
AAA_15
AAA_29
Rad50_zn_hook
ABC_tran
Arf
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
13386891
NCBI-ProteinID:
XP_003862155
UniProt:
E9BK94
LinkDB
All DBs
Position
28:complement(191131..195213)
Genome browser
AA seq
1360 aa
AA seq
DB search
MTSIEKLQLCGVRSFDPNPANQQFIQFQKPLTVILGKNGAGKTTIIEALLNACTGTMPPG
TGTEKGSFVYDPKVVGETEVKAQIRLIFTGKGGKLMQVIRSFQATRSAHRVTFTTLDNTV
AFQDLATGEVISSTYRSSDVDRVVPEMLGVSPAVLEHVIFCHQEECNWPLGPPKDVKRIF
DDIFAATRYVLALDRLRDNSKEFRRQLKEHEASLMALREHREQAKQLEQQIAQKESVVKA
IQGRSIGIEPELRGLRQAREELRTVEEQIETLQREVAVTNGRLEERREAVRRMGVPATSQ
TLDDLLEMRGSFTAQMQQLEEGLVHDTKRYDAAAARRRAQEEEMYKCRSNVQLLEREAQL
HKQNVAQLRELIQHLSNEYVLSEGNIDERSLHRLLQKAEDAVAAERQRARAASESVQQHI
RDAEDGVQGGSRAVDGCKKEIEVREHAVENVRRRIKENAAAIAALGGDGCRTKLRQVQVE
VEELQQRVAAAEELRKKGDGEHQSQRILMELEEQNSTVAQLREEMMQQKLLERQQQDLVL
MRQQIDEARAAVAAALQRDVLPILHEVGVQVPQDAAADSFSLTTLTSLRSQAAQIRQLKA
EELRALQARVLELEKVCALQEQKMSYSTDELGQCRRTVDAGTRQCAGLVPDMDVYEEVLL
QAREAAETAAQKRHALEALASCYHDFMVVAKEERTCAVCERPFDSEDALESFLTRKADKQ
RASPEALAAVQAAVNTAQEAYQSLEKLQSVVVTVRQNRHRIPVLEAELDALGDKMKQNRA
EQRGVCAARDAAQHVVHQLDTMYQHLCMACTMGEKTVALRDTLARKEKDFEAAQAEQQPH
ETQRKWGSGDGATARAEPPQRSYEELCEAYAAATERLHKLNRQFTEAQRMERGQAENAAE
RELQDRKTAMFQAEVAVSKLEDLEAAARELQEEAAQHRTRVEELKRQAAEAQHSVEAHQQ
RVLQLRAELQKTDAAERGVLDTAEKQLRELQLSLPPVLSYVQNGCARQLEELRVHLRETE
SAYKAAAQEEEGLASRMKEARKTLSDQHRRSAEIDRHIDILQQEASIAADEAHLAETERT
LASLKSDRLQDVEQLLGEEARHASLATLRELITAKITSLEKIRAQQDGNTEAMLLDVNQL
KQQLRGDKYQNIEKRYRSTFLKVQTTEISIQDIEKYYSALEKAVQSYHQEKIAQINQIIA
ELWRQTYRGSDIDTVEIRSETEGTTTTTARRSYNYRVVMKRGNNEMDMRGRCSAGQKVLA
SIIIRLALSEAFCCDCGILALDEPTTNLDDDNARSLADALRTLIQARRAVKHFQLVVITH
DEQFVRALGGQSLEKFYYVHKDREGAFSVIDERTFDQLFA
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcatcgagaagttgcagctctgtggcgtgcgcagcttcgaccccaacccggcg
aatcagcagttcattcagttccagaagccgttgacggtcattctcggcaagaatggtgct
ggcaaaaccaccatcatcgaggcgctgctgaacgcgtgcacggggaccatgcctcccggc
actgggaccgagaagggctcctttgtgtatgatcccaaggttgttggcgaaacagaggtg
aaagcgcagattcgactgatattcaccggcaagggtggtaagctgatgcaggtcatccgc
tcctttcaggccacacgcagcgcgcaccgtgtcacttttacaacactggacaataccgtc
gctttccaggacttggccaccggggaggtgatctcgagcacgtaccgctccagcgatgtc
gaccgtgtcgtgccggagatgctcggcgtgtcgccagctgtgctggagcacgtcattttt
tgtcaccaggaggagtgcaactggccactgggaccaccgaaggatgtgaagcgaatcttc
gacgacatcttcgccgcgactcggtacgtcctcgcactggaccggctccgcgataacagc
aaggagtttcgccgccagctgaaagagcacgaggcgagtctgatggcgcttcgagagcac
cgcgagcaagcaaagcagctggagcagcaaatagcgcagaaggaaagcgttgtgaaggcc
attcagggccgcagcatcggcatcgagccagagctacggggcctgcgccaagcgcgtgag
gagctgcgtacggtggaggagcagatcgagacattgcagcgtgaggtggcggtcacgaac
gggcgtctcgaagagcgtcgcgaggcggtgcgccggatgggtgtgccagccacaagccag
acgctagacgatctgctcgagatgcgcggcagcttcaccgcgcagatgcagcagctcgaa
gagggtctcgtgcacgacaccaagcgctacgatgcggccgccgcgcggcgacgcgctcaa
gaggaggagatgtacaagtgccgctcgaacgttcagctgctggagcgtgaggcgcagctg
cacaagcaaaacgtggcgcagcttcgtgagcttatccagcacctgtctaacgagtacgtt
ctgagtgagggcaacatcgacgagcgcagtctgcaccgtcttctccaaaaggcggaggac
gccgtggcggcggagcgtcagcgtgctcgcgctgcctcagagagtgttcagcagcacatt
cgagacgcggaggacggcgtgcagggcggctcccgcgccgtggatgggtgcaagaaagag
atagaggtgcgcgagcacgccgtggagaatgtgagacgccgcatcaaggagaacgccgct
gccatcgcggcacttggcggggatgggtgccgcacgaagctgcgccaggttcaggtggag
gtggaggagctgcagcagcgtgtcgctgccgccgaagagttgcggaagaaaggtgacggg
gagcaccaaagccagcgcattctcatggagctagaggagcagaatagcaccgtggctcaa
ctgcgtgaggagatgatgcagcagaagctgctggagcgccagcagcaggatctagtgttg
atgcgccagcagatcgatgaagccagggcggccgtggcggcggcgctgcagcgagacgtg
ctcccgattttgcacgaagttggcgtacaagttccgcaggatgcggctgccgactctttt
tcattgacaaccttaacgtctttgcgctcccaagctgcccagatacggcagctgaaggcg
gaggagttgcgtgctctccaggcgcgtgtgctagagctggagaaggtgtgcgcgctgcag
gagcagaagatgtcctacagcaccgatgagctgggccagtgtcgccggactgtggatgcc
ggcactagacagtgcgccggcctcgtcccggacatggacgtctacgaggaggtgctgctg
caggctagggaggcggcggagacggcggcgcagaaacgccacgccctggaggccctcgcg
tcgtgctaccacgatttcatggttgtggcgaaggaggagaggacttgtgccgtctgcgag
cgtccctttgacagcgaagatgcactggagagctttctgacgcgaaaagcggacaagcag
cgcgccagcccagaggcactagcggctgtgcaggcggccgtcaacacagcccaggaggcg
tatcagagtcttgaaaagctgcagagcgtcgtggtgacggtgcgacagaacaggcatcgt
attccggttctagaggccgagctcgacgcgctgggggataagatgaagcagaaccgcgca
gagcagcgcggggtctgcgcggcccgcgatgctgcccagcatgtggtgcatcagctggac
accatgtaccagcatctgtgcatggcatgcaccatgggagagaagacggtagcactgcgc
gatactctggcaaggaaggagaaagactttgaggcggcgcaggcggagcagcaaccacac
gagacacagcgaaagtggggcagcggcgatggtgccacagcgagagctgaaccaccgcag
cgctcttatgaggagctgtgtgaggcctacgcggctgcgacggagcgattgcacaagctc
aacaggcagttcactgaggcccagcggatggagcgcggccaggctgagaatgcggcagag
cgggagctgcaggatcgcaagacagcgatgttccaggctgaggtcgcggtttcaaagctg
gaggacttggaggcggccgctcgtgaactacaagaggaggctgctcagcaccgcacgcgg
gtggaggagctgaagcgccaggcagcagaggcgcagcactccgtggaggcccatcagcaa
cgcgttctgcaactccgtgccgagcttcagaagacggacgctgccgagcgtggtgttttg
gacacagcagagaagcagcttcgcgagctgcagctgtcgctgcctccggtcctcagttac
gtgcagaacggctgcgccagacagctggaggagcttcgggtgcacctgcgcgagactgag
agcgcgtacaaagccgcggctcaggaggaggaggggcttgccagccggatgaaggaagcg
cggaagacacttagcgaccagcaccgccgctctgctgagatcgaccgccacatcgacatc
ctgcagcaggaggcgtccattgcggccgacgaggcgcacttggcggagacagagcgcacc
ctcgcctccctgaagtcggaccggctgcaagacgtggaacagctgctgggggaggaggca
agacatgcaagcctggccacactgcgcgagctgatcaccgccaagattacgtcgctggag
aagatacgtgcgcagcaggatggcaacacggaggcgatgctgctcgatgtaaatcagctg
aaacagcagctgcgtggcgacaagtatcagaacatcgagaagcgctaccggtccacgttc
ctgaaggtgcaaacaacggagatatccatccaggacattgagaagtactacagtgcgctg
gagaaggcggtgcagtcgtaccaccaggagaaaattgcacagatcaaccaaatcatcgcg
gagctgtggcgccagacgtaccgcggcagcgacatcgacacggtggagattcgctcagag
acggagggcacgacgacgactacggcgcggcgcagctacaactaccgcgttgtcatgaag
cggggcaacaacgagatggacatgcgtggtcgctgcagtgctggacagaaggtgctcgcc
tccatcatcattcggctcgcgctgagcgaagccttctgctgcgactgcggcatcctcgcc
cttgatgagccgacaacaaacctcgacgacgacaacgctcgcagcctggcggacgcgctg
cgcaccctcatccaggcgcggagggcggtgaagcactttcagctcgtcgttatcacgcac
gacgagcagtttgtgcgtgcgctgggagggcagtcgctggagaagttctactacgtccat
aaggatcgagagggcgccttctcggtgattgatgaacgcacctttgaccagctttttgcg
tga
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