Leishmania donovani: LDBPK_312680
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Entry
LDBPK_312680 CDS
T02289
Name
(RefSeq) RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ldo
Leishmania donovani
Pathway
ldo03020
RNA polymerase
ldo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDBPK_312680
09124 Replication and repair
03420 Nucleotide excision repair
LDBPK_312680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ldo03021
]
LDBPK_312680
03400 DNA repair and recombination proteins [BR:
ldo03400
]
LDBPK_312680
Enzymes [BR:
ldo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDBPK_312680
Transcription machinery [BR:
ldo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
LDBPK_312680
DNA repair and recombination proteins [BR:
ldo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
LDBPK_312680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
PspA_IM30
LON_substr_bdg
Motif
Other DBs
NCBI-GeneID:
13389687
NCBI-ProteinID:
XP_003863355
UniProt:
E9BN38
LinkDB
All DBs
Position
31:complement(1279655..1284643)
Genome browser
AA seq
1662 aa
AA seq
DB search
MSGGAPLPPSQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMG
TTDFEYSCETCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTND
PSEMKKIAHLQGLNRLRMVAKLCGSVCKRSKDIQGCEGKGRQPRIGRFAGIYPGLQIKVT
QEEQDYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRDLILTVLPIPPPQVRPAVAFGP
AKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRALLQEHVATFFNNASTYYKPAKV
GDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTF
PERVNVINKKRLTEFVQRTTYPSANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVID
GDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTK
AELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWEL
PIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGV
VGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNN
VLHKTRQSVEKIGAAANNGKLTRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTN
SFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMAT
RGYVEGLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQ
ELIQLAYGEDGLDGARIEGNQAFPIPHMTNSEMADKYRYEYNDEGSFSENMGGHYMDPFV
RDSLLRDPQSVLKLQEEFEQLMKDRAMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMG
KRSQVSNLNPITVINRVRELQEDLVQLFPSYHKDYNGRFANVLSQQRVERALTLFGIHLR
QILGSKRVLKEYKLNDKAFEYLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNT
FHNAGISSKNVTLGVPRLLELLNVSKNQRNASVAVCLIREYQKRNKAQEAQQFIEYCTLA
NITTTVQIIYDPDPRNTVVAEDEEMIRWEQAVMNEEDEEPDAEQPPSPFIARLILDNDLF
NDKRLNMKDVKSAIRQVDDTYMVQANMENDGQRIVRLRPRKCTGADSVPALTKAVAQLLQ
SVHLRGIPGIKKTLLKEGNTFRVDPETGGIKNESSWMVDTEGTALQRIFVGVVNNEGKNI
IDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYL
MAVSRTGINRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGL
FDLLLDMSKLQHVVPLDKATEARTSNVYHTDASVAPGSSTLQGSHGELPPSTVHENSSLA
AGASSVYPRHERAGMYGGIPIEASEVQFSSALPTVMGTVLAASNTTEYHSSHHLSGASTY
LASSALPSASALDTELSSYHLQSVARSTAYGYAPVTASGMPMPGGAQLSVGEGGSMPYPY
EASNGERFGSLGGAASSRASAPYDPTQQPSQEFSPTEEQEEP
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtggtgcgcctctcccgccttcgcagatgccactgcagaaggtgcatgaggtt
cagtttgaggtgttcaaggaggcgcagatcaaggcctatgccaagtgcatcatcgagcat
gccaagtcctacgagcacggccagccggtgcggggcggcatcaacgacctgcgcatgggc
acgacagactttgagtacagctgcgagacctgcgggctgaagcacccggaatgccccggc
cactttggctacgtggagctggccgagccgatcttcaacatcaacgtgtttgacgtcgtg
ctgatcgcgcttaagtgcgtctgcaagtactgcggcgcgctgctgatggacacaaatgac
ccgtcagagatgaagaagatcgcgcatctgcagggcctcaaccgcctgcgcatggtcgcc
aagctctgcggcagcgtgtgcaagcggagcaaggacattcagggctgtgagggcaagggc
cgccagccgcgcatcggccgcttcgctggcatctacccaggtctgcagatcaaggttact
caggaggagcaggattacgtgtggcacgccgagaacgcgcggcaggtgctggaccgcgtc
tcggacagcgatgccctcatcatgggcttcgacccgcgcttctgccacccacgggacttg
atcctcacggtgctgccgattcccccgccgcaagtccgccccgccgtcgccttcggcccg
gccaagtcggatgatgagctcacccaccaaatcatgtccattgtgaagcgcaacattcaa
ctacgcaaggacaaggagtccggcgtcaaagccgccgtggaccgctcgcgcgcacttctg
caggagcacgttgccactttcttcaacaatgcctccacctactacaagcccgccaaggtc
ggcgacaccaagaagctcaagtcactgacggagcggctgaaggggaagtacggccggctg
cgcggcaacttgatgggcaagcgcgtagacttttcggcccgcacggtcatcaccggcgac
ccaaacatcgacgtcgatgaagtcggcgtaccgttctccgtcgccatgacgctgaccttc
ccggaacgggtgaacgtgattaacaagaagcgtctgacggagtttgtgcagcgcaccacg
tacccttcggccaactacatcatccgaccgaacggcaacgtaacgaagctggctctcgtg
aaggatcgcaacgccgtccacctcgacgttggcgacgtggtcgagcgccacgtcatcgac
ggcgacgttgtgctcttcaacaggcagccgacgctgcaccgcatgagtatgatggggcac
cgcgtccgcgtgctgaactacaacacctttcgcctgaacctgtcctgcacgacgccgtac
aacgccgatttcgacggcgatgagatgaacctgcatgttccgcagtcgctgctcactaag
gcggagctgattgagatgatgatggtacccaagaacttcgtgtcgccgaacaagtcggcg
ccctgcatgggcatcgtgcaagacagcctgctcggcagctaccgccttaccgacaaggac
acctttgtcgacaagtactttattcagagcgtcgcgctctggctggatctgtgggagttg
ccgatcccggccatcctgaagccgcgtccactctggaccggaaagcagatcttctcgctt
atcctgccggaggtcaaccatcccgcctctccgtacgacaagccgcccttcccgcacaac
gacaagaagatcatgatccagcgtggccagctgctggtgggcgccatcacgaagggcgtc
gtcggcgccgccccggggtcgcttatccacgtcatcttcaacgagcgcggctccgatgag
gtggccaagttcatcaacggcgtgcagcggatcacgacgtacttcaactactgctttgcc
ttctcggtcggcgtgcaggacaccgtggccgatgcgacgacgctcaaggagatgaataac
gtgctgcacaagacgcgccaatccgtcgagaaaatcggcgccgctgcgaacaacggcaag
ctgacgcgcaaggctggcatgtcgctgcttcagtccttcgaggcagatgtgaacagtgcc
ctaaacaagtgccgtgaggaggcggcgaagaaggcgctgagtaatgtccgccgcacaaac
agcttcaaggtcatgatcgaggccggaagcaagggcagtgacctgaacatttgccagatc
gccgtattcgtcgggcagcaaaacgtcgccggcagccgcatccccttcggcttccgtcgc
cgcacgctgccgcacttcatgttggacgactacggtgagacgtctcgtggcatggcgacg
cgcgggtacgtggaagggctgcagccgcacgagttttacttccacaccatggcagggcgc
gaagggctcatcgacacagccgtcaagacgtccgacaccggatacctgcagcgaaagctc
gtgaaggcgctggaggacgtgcacgcctcctacgacggcacggtacggaacgcgaaccag
gagctcatccagttggcgtacggcgaagacgggctggacggtgctcgcattgagggcaac
caagccttcccgatcccgcacatgacgaacagtgagatggctgacaagtaccgctacgag
tacaacgacgagggcagcttctcggagaacatgggcggccattacatggatccgtttgtg
cgcgactcgctgctgcgcgacccgcagagcgtgctgaagctgcaggaggagttcgagcag
ctgatgaaggatcgcgcgatgtcgcggctcgttattgacatggaggacaagaacaagctc
aagatgaacctgcccgtgaacgtcgcgcggctcattcagaacgcgcgcacgacgatgggt
aagcgcagccaggtatccaacctgaacccgatcactgtgatcaaccgcgtgcgggagctg
caggaggacctcgtgcagctgttcccgtcctaccacaaggactacaacggccgcttcgct
aatgtgctgagccagcagcgcgtggagcgggccctcacgctctttggcatccacttgcgc
cagatcctcggctcgaagcgggtgctgaaggagtacaagttgaatgacaaggcgtttgag
tacctgctgaaggagatccgcaccaagtaccagcagtccctcatcacccctggtgagatt
atcggcgccattgccgcgcagtcgtgcggtgagcccgcgacccagatgaccctgaatacc
ttccacaacgccggcatttcgtccaagaacgtgaccctcggcgtgccgcggctgctggag
ctgctgaatgtgagcaagaaccagcgcaatgccagcgtggccgtctgcctgatccgcgag
tatcagaagcgcaacaaggcgcaggaggcgcagcagtttatcgagtactgcacgctggcg
aatataacgacaacggtgcagatcatatacgaccccgacccgcgcaacaccgtcgtggcc
gaggacgaggagatgatccggtgggagcaggcggtgatgaatgaagaggacgaggagccg
gacgcagagcagccgccgtcgcctttcattgcacgcctcatcctggacaacgacctcttc
aacgacaagcggcttaacatgaaagatgtgaagagcgcgatccggcaggtagacgacacc
tacatggtgcaggcaaacatggagaacgacggccagcgcattgtgcggctgcgtccgcgc
aagtgcaccggggcggactccgtgccggcgctcacgaaggcggtcgcgcagctgctgcag
agcgtgcacctacgcggtatccctggcatcaagaagacgctgctgaaggagggcaacacg
ttccgcgtcgaccccgagacgggcggcatcaagaacgaatcgagctggatggtggacaca
gagggcacggcgctgcagcgcatcttcgtcggcgtcgtgaacaacgagggcaagaacatc
atcgacttctccaagaccagtagcaacaagatccctgaggtggtgacggtgctgggcatc
gaggcggcgcggcgcaagctgctctccgagctgcgcgaggcttatctcgcctacgggcta
aacatcaactaccgccactacaccatccttgtcgataccatgtgccagcgcggttacctg
atggccgtcagccgcactggcatcaaccgcagcgagacatccgggccgttgatgcggtgc
tccttcgaggaaacggtgaaggtgctcatgacagcggccgcgtttggcgagaaggatccg
gtgcgtggggtatctgcgagcctcgtactcggcaatcaggcccgcatcggcaccggcctg
tttgaccttctgctggacatgagcaagctgcagcacgtggtcccgctcgataaggctacg
gaggcacgaacctcaaacgtgtaccacaccgacgcatccgtcgcaccgggctcctcgacg
ctgcaggggtcgcacggcgagctgccgccgtcgactgtgcacgagaacagctcccttgcc
gccggtgcctcctccgtgtacccgcgacatgagagagctggcatgtacggcggcatcccg
atcgaggcgagcgaggtgcagttcagcagtgctctgccgacggtgatgggaacggtcttg
gccgcctcgaacacgaccgagtaccacagcagccaccacctctctggtgcttccacgtac
ttggcgtcgtcggcgctgccgagcgcgagtgcgcttgataccgagctgtcctcctaccac
ctacagtcagtcgcccgctctactgcgtacggctacgcacccgtgaccgcctctggaatg
cctatgcccggcggtgctcagctatccgtcggcgagggcggcagcatgccatacccgtac
gaggcgtcgaacggcgagcgattcggctctctcggcggcgcggccagctcacgggcgagt
gcgccctacgaccccacccagcagccgtctcaggaattctcgccgaccgaggagcaggag
gagccgtga
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integrated database retrieval system
