Leishmania donovani: LDBPK_342030
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Entry
LDBPK_342030 CDS
T02289
Name
(RefSeq) ATP-dependent RNA helicase-like protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ldo
Leishmania donovani
Pathway
ldo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LDBPK_342030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ldo03041
]
LDBPK_342030
03009 Ribosome biogenesis [BR:
ldo03009
]
LDBPK_342030
Enzymes [BR:
ldo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LDBPK_342030
Spliceosome [BR:
ldo03041
]
Complex A
U2 snRNP components
U2 related factors
LDBPK_342030
Complex B
LDBPK_342030
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
LDBPK_342030
Ribosome biogenesis [BR:
ldo03009
]
Eukaryotic type
90S particles
Helicases
LDBPK_342030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
SRP54
AAA_7
AAA_16
AAA_30
nSTAND3
ABC_tran
AAA_29
AAA_25
ResIII
Flavi_DEAD
TrwB_AAD_bind
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
13392771
NCBI-ProteinID:
XP_003864362
UniProt:
E9BR01
LinkDB
All DBs
Position
34:complement(891915..894332)
Genome browser
AA seq
805 aa
AA seq
DB search
MLSWVKTHMLLHPALHRLALLFFLYCGKSCTLPTAHLMALKRVREEAAENGEAGLGDTLV
SQLPKKRPEVAVCTSSSALSPFTRQPFSARYRQLLQSRQRLPVFEKRHLIQETVRTNSVT
LLVGETGSGKTTQVPHFLAELQDTFTGVIACTQPRRIAAISVATRVAEEMDVPLGAHVGY
HVRFDSRQCDATRVLYMTDGMLLREAFTDSDLQKYSVVVVDEAHERTIDTDVVLGLLKRL
LTRRPLFRLVVMSATLDVAKIQSYFPGAPLVHVSGRMHDVDVLYMPHPVRDYVEATVSCV
LQLHEREPAGDILCFLTGEAEIERAVAALHQALGSSSAAASKEQEAPVQGRGKDLTLFNT
PADDLARPTEVVVLPLYGSLSLQEQQKVFATYPPNTRKIVVATNIAETSVTIDGIVYVVD
CGYQKQSLYNSEARVDYLLPAVISKASAEQRKGRAGRTRPGKCFRLFTSADFATFPDQTH
PEILRTNIVNTVLLLLTLGVANPCEFPFIDPPSDQGMSDAFYQLLYFGAVDDGLQLTDFG
RRMAVFPVDVCLARMLLMAPKHGCGADAAVVAAMLEAGNAFSRPPSRLAEAREAHARFDD
ADGDHVVLFRVFHAYFKNQQNGKRFCYENYLRHQTLQQAVQVYNQLRRLMSQLTIPVQST
YIPEREYVDTVALRKAVLEGFFTQVAFLTPVAPITHTAGADPTTRVYRTVRDALSVTLHR
QSVLAATHKSRALPTWIVFDRLEVQGDSGTFIRTASAVEVGWLLDVSDFYTDLSEIPDGE
IAQVLRRAREAESSVHAGKAERESV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgctctcgtgggtgaaaactcacatgctcttgcaccccgccctccatcgtcttgcgttg
cttttctttttgtattgtggcaaatcttgcacattgcctacagcgcacctcatggccctc
aagcgcgtgcgcgaagaggctgccgagaacggcgaggccggcctcggcgacacactggtc
tcccaactcccgaagaagcgtcctgaggtggctgtctgcacctccagctccgcattgagc
cctttcacgcggcaacccttctcagcccgctaccgtcagctgttgcagtcgcgtcagcga
cttcctgtgttcgagaagcgccaccttatacaggagacggtgcgaaccaactctgtcacg
ttgctcgtgggcgagacgggcagcggcaagacgacgcaggttcctcactttcttgcggag
ctgcaggacaccttcaccggcgtcatcgcatgtacgcagccacgtcgtatcgcggccatc
tccgttgccactcgcgtggccgaagaaatggacgtgcccctcggtgcgcatgtcggctac
cacgtccgcttcgactcgcgccagtgcgacgccacgcgggtgctctacatgacggatggc
atgctgctccgtgaagcgttcacagattcggacctccaaaaatacagtgttgtggtggtg
gacgaggcgcacgagcggacgatcgacacggatgtggttctcggcctcctgaagcgactc
ctcacacggcgtccgcttttccgactggtggtcatgtcggccacgctggacgtggcaaag
attcagtcctacttccccggtgcgcccctcgtgcacgtctcggggcgcatgcacgacgtg
gacgtcttgtacatgccacatccggtgcgcgattacgtggaggcgactgtgtcgtgcgtg
cttcagctacatgagcgcgagccggccggggatatcctctgcttcttgactggcgaggcg
gagattgagcgggctgtcgcggcacttcaccaggccctcggctcgagctctgcggccgcc
tccaaggagcaagaagcgccggtgcaggggcgcggaaaggacttgacgcttttcaatacg
ccggcggacgacctggcgcggccgacggaggtggtggtgctgcctctctacggttctctt
agcctccaggagcagcagaaggtgtttgccacctatccccccaacacgcgcaagattgtc
gtggccacgaacattgccgagacgtccgtcaccattgacggcattgtctacgttgtggac
tgcgggtatcagaagcagagcttgtacaactccgaggcacgcgtggactacttgctgccg
gcggttattagcaaggcctccgccgaacagcgcaagggtcgcgctggtcgtacgcggcct
ggcaagtgcttccgcctcttcacgtcggccgactttgccacttttcccgatcaaacgcat
ccggagatactacgcacgaacattgtgaacaccgtgctgctgctgctcacgcttggcgtc
gctaacccgtgtgagttccccttcatcgacccgccctcggaccagggcatgagcgacgcc
ttctaccagctcttgtacttcggcgccgtggatgacgggcttcagctcacggactttggc
cgacgcatggccgtattccctgtggatgtctgcttggcacgaatgctgctcatggccccc
aagcacgggtgcggtgccgacgccgcggtggtggcggcgatgctggaggctggaaacgcg
ttcagccgcccgccatcgcggttggccgaggctcgcgaggcgcacgcgcgcttcgacgac
gccgacggcgaccacgttgtgctctttcgcgtctttcacgcgtacttcaagaaccagcag
aacggcaaacgcttctgctacgagaactacctacgacaccagaccctacagcaagcggtg
caggtgtacaaccagctgcggcggttaatgagccaactcacgataccagtgcagtccacc
tacatcccggagcgcgagtacgtggacacggtggcgctccgcaaggccgtgctggaggga
ttcttcacacaggtcgccttcttgactcccgtggcacccatcacccatacagctggagcg
gacccgacgacgcgcgtctaccgcaccgtccgggacgccttgagtgtgacgctgcatcgt
cagtccgtgcttgcggcgacgcacaagtcacgcgcgcttccgacctggatcgtgtttgac
cgtctggaagtgcaaggggactccgggacgtttatccgaaccgcctcagcagtggaggtg
ggctggctgctggacgtcagtgacttctacacggacctcagcgaaatcccagacggcgag
attgcgcaggtgctgcgccgtgctcgtgaggcggaaagtagcgtacacgcgggcaaagcc
gagcgcgagagtgtgtag
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