Leishmania donovani: LDBPK_361870
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Entry
LDBPK_361870 CDS
T02289
Name
(RefSeq) exoribonuclease 2, putative
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ldo
Leishmania donovani
Pathway
ldo03008
Ribosome biogenesis in eukaryotes
ldo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LDBPK_361870
09123 Folding, sorting and degradation
03018 RNA degradation
LDBPK_361870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ldo03021
]
LDBPK_361870
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_361870
03009 Ribosome biogenesis [BR:
ldo03009
]
LDBPK_361870
03016 Transfer RNA biogenesis [BR:
ldo03016
]
LDBPK_361870
Transcription machinery [BR:
ldo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LDBPK_361870
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
LDBPK_361870
Ribosome biogenesis [BR:
ldo03009
]
Eukaryotic type
Pre-60S particles
RNases
LDBPK_361870
Transfer RNA biogenesis [BR:
ldo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LDBPK_361870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
13388188
NCBI-ProteinID:
XP_003865302
UniProt:
A0A3Q8IH53
LinkDB
All DBs
Position
36:complement(716917..719556)
Genome browser
AA seq
879 aa
AA seq
DB search
MGIAGFFLWLQRWYGDCIDNIPQDVVDAAFKGQTLPHSHASAYSYDNFYVDMNGLIHPCC
HDTAPLPEPENEEEMFERMFDQLDLLVRVVRPKKCLVLCVDGVAPRSKMNQQRSRRFRAA
DERLESDAISNACADRIVSEYHLPRPRVRERWDHNVITPSTAFMERVALALEWYIMKKLN
EDAAWRHLTVVFSDAHVPGEGEHKIMQYIRGLRSQPGYDYNTSHVIHGMDADLICLGLST
HEKHVCILRNQLTETFQPDHNRFCYFNLSTYREKLMQDFSNIEGMQFERVVDDFIFLCFF
VGNDFLPHVPLVSIKTRGIEMLLDHYVRDFALHGYLTQLGEVDYAHLHIFLMNFTSKCMM
KLTKEYYGVVRAKERAKQHVEERVTKTEAQVSEVLGTLLPDRSNAQEVSDALLALMSSAR
KERTRLVVDKQPLGFSYLDKAYRDAYYQHKFGWDPSANRAAFESHIRLCCAEYLRGLQWV
MRYYTKGCPSWEWYFPYHYAPLLQDLAAFTATVNVEMRMSAPLHPVEQLLAVLPRLSVHA
LPEELHEAVNDPKSVLGKFYPAIVDVDFSEANFSYQGVLRIPFINCEALSKACRQLVELE
EDFGSTFLYCHESTSLAKQLDALTGPSNSALPLATSLAPPVMPIPASVASTMPVAGRVGR
YEAEWPRHEELQCPDPGMAKSTRYGGRIKSNQVNQYRYELSTQADYRPVLMGEEKATKNG
AAAAAASKTSKRLEKEQSPPRHRKRGRDADHVVNSNDAKRKRGSSRHDDDRDRRERHRSN
GEREQNGGSRRRSKDVDTCGASSSSPHTSSSKHRSKEEEKKRSQHETGSRESKSEAHPAP
LSSSSRRAKKSREAKKELRPSEKVTPTKPSRHAHRQRRA
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgctgggttctttttgtggttgcagcgatggtacggcgactgcatcgacaac
atcccacaggatgtggtagatgctgccttcaagggtcagacgcttccgcacagccatgcc
agtgcgtactcgtacgacaacttctatgtggacatgaacgggttgattcacccctgctgc
cacgatacggcgccgctgccggagccagagaacgaggaggagatgtttgagcgcatgttc
gaccagcttgacctcctcgtcagggtggtgcgtccgaagaagtgcctcgtgctgtgcgtt
gatggcgtcgccccacgtagcaagatgaatcagcagcgcagccgtcgcttccgtgccgca
gacgagcgcctggagagcgacgccatctcgaacgcctgtgcagaccgcattgtctccgag
tatcaccttccccggccacgcgtccgggagcgctgggaccacaacgtcataaccccgtcc
acggcgttcatggagcgcgtcgccctcgcgcttgagtggtacattatgaagaagctaaac
gaggacgccgcatggcgccacttgacggtcgtcttctcggacgcgcacgtgccgggcgag
ggcgagcacaagatcatgcaatacatccgcggcctgcgctcgcagcccggctatgactac
aacactagccacgtcattcacggcatggatgccgacctcatctgcctcgggctgtcgacg
cacgagaaacatgtctgcatcttgcgcaaccagctcaccgagaccttccagccagatcac
aatcgcttctgctactttaacctaagcacgtaccgcgagaagcttatgcaggacttttcg
aacatcgagggcatgcagttcgagcgcgtcgtggacgacttcatcttcctctgcttcttc
gtcggcaacgatttcttgccgcacgtgccgctcgtgtccatcaagacgcgtggcatcgag
atgctccttgaccactacgtgcgcgacttcgcgctgcacggctacttgacccagctcggc
gaggtggactacgcccacctgcacatcttcctcatgaacttcacttccaagtgcatgatg
aagctgacgaaggagtactacggcgtcgtccgcgctaaggagcgcgcaaagcagcacgtt
gaggagcgcgtcaccaagacggaggctcaagtatcggaggtgctggggaccttgctgcca
gatcgcagcaacgcacaagaggtcagtgacgcgttactggcgctcatgtcatctgcgcgg
aaagagcgcacccgcctcgtcgtggacaagcagccgctcgggttctcctacctcgacaag
gcgtaccgcgacgcgtattaccagcataagttcggctgggacccgtcggccaaccgtgcc
gccttcgagagccacattcggctctgctgtgccgagtacctgcgtgggttgcagtgggtc
atgcgctactacacgaaggggtgcccgtcgtgggagtggtactttccgtaccactacgcc
ccgctgctgcaggacttggcggcgttcacggcgacggtgaatgtcgaaatgcgcatgagc
gctcctcttcatccagtagagcagctgctggcggtgctaccgcggctgagcgtgcacgcc
ctgcccgaggagctgcacgaggccgtgaacgaccccaagtccgtcttgggcaagttctac
cccgccatcgtcgatgtcgactttagcgaagccaacttctcgtaccaaggggtactgcgt
attcccttcatcaactgcgaggccctcagcaaggcctgccgacagctggttgagttggag
gaggactttggcagcacattcctctactgccatgagtccacttcactagcgaaacagcta
gacgctctcactgggccgagcaacagcgcattgccgctggcgaccagcctggcgccgccg
gtgatgccgatccccgcctcggtggcatcgacgatgccggttgccggccgagtgggccgc
tatgaggcggagtggcctcgacacgaggagctgcagtgccccgacccgggcatggccaag
tccacgcgctacggtggacgcatcaagtcgaaccaggtgaaccagtaccgctacgagctc
agcacacaggccgactaccgtcccgtgctcatgggcgaggagaaggcgaccaaaaacggg
gcggcggcggcggccgcatcgaagacgtccaagcgactggaaaaagaacagtcaccgccg
cggcaccgcaagcggggccgcgacgcagaccacgtcgtcaacagtaacgacgctaaacgc
aagagaggctccagccggcacgacgacgacagggacaggcgcgagcgccaccgcagcaac
ggcgagagggagcagaatggcgggagccggcgccgcagcaaggacgtcgacacgtgtggg
gcctcttcctcctcgcctcacacctcatcttctaagcatcgctccaaggaggaggaaaag
aagcgctcgcagcacgagactggatctcgcgagagtaaaagtgaggctcaccccgcaccc
ttgtcttcgtcatctcgacgcgccaagaagagccgcgaagcgaagaaggaactgcgaccg
tccgaaaaggtgacgccgaccaagccgtcgcggcacgctcatcgacagcggcgcgcgtga
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