Leishmania donovani: LDBPK_363150
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Entry
LDBPK_363150 CDS
T02289
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ldo
Leishmania donovani
Pathway
ldo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDBPK_363150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_363150
03041 Spliceosome [BR:
ldo03041
]
LDBPK_363150
03009 Ribosome biogenesis [BR:
ldo03009
]
LDBPK_363150
03016 Transfer RNA biogenesis [BR:
ldo03016
]
LDBPK_363150
Enzymes [BR:
ldo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LDBPK_363150
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LDBPK_363150
Spliceosome [BR:
ldo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LDBPK_363150
Complex C
U4/U6.U5 tri-SnRNP related factors
LDBPK_363150
Ribosome biogenesis [BR:
ldo03009
]
Eukaryotic type
Pre-60S particles
Helicases
LDBPK_363150
Transfer RNA biogenesis [BR:
ldo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LDBPK_363150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
PhoH
Phage_scaffold
AAA_16
AAA_22
nSTAND_NTPase5
FlxA
Motif
Other DBs
NCBI-GeneID:
13388316
NCBI-ProteinID:
XP_003865430
UniProt:
E9BU24
LinkDB
All DBs
Position
36:complement(1238524..1241388)
Genome browser
AA seq
954 aa
AA seq
DB search
MSDRREDEPVAKRTRREVDPAITFPYELDTFQKTSIDALEEGDSVLVSAHTSAGKTTVAL
YAIAKALREKKRIIYTSPIKALSNQKFREFSEKFDSVGLMTGDTTIKADADCLVMTTEIL
RSMLYRGTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREF
ADWVENIHPTTKVHVIHTEYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFGKAIASMG
AEGGANGVGAAGPGNGSSKDPRGNHKGSGGRSHGGFSQSMMEIVKLVMDRNMYPVIVFSF
AKAECERNALALSRLNFNNTEEDALVMEVFNNAMESLAEEDRKLPAIEHLQPLLKRGVGI
HHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLTG
GEYIQMSGRAGRRGLDRVGVVITMVDEAVEPDTLKQLTSGGADVLLSSFHLTYNMVLNLL
RVEGVDPEFMMKRSFSQFQRLREKPALEEKGAALRRSIEAINVTHESAFRQYTICEDMIA
KKRNEVDHILRQPKFLKNWVQAGRFVHIIRASDQRDFGWGICRSFAAKSTNPNFSDPSTF
SIQAAVICMKADASNPSALTPCPVSEYTSEKADLYTVTFDFSDVQCLSTLKTNLPESPDS
ERGRAEVVQILSKLQRQFGHDIPVLTSAQMGAEDAQLSKLQTQLSNLQKQLEGNILAISP
TPELQEEFEKYKRKADLEAQLEQVKGELAGMGKAVFSEELKQMMRVLRRLDYIDKDNIIL
RKARVACEITTTDENEILLTELLFKGVLNSMETEMIVALLSCLVNVHRTPDGFSLPQEFE
QPLKDLNEIVTRIATVSAESGLIQEDSSEEKVMPSLMEVIYLWAKGAKFVDLVSMTTAYE
GDIVRTMRRLEEMLRQLASAARSPAIGSIELHEKFLKGIQLIKRDIVFASSLYL
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagacgcgaagacgaaccggtggcgaagcggacacgccgcgaggtcgacccg
gccatcactttcccctatgagctggacacgttccagaagacgagtatcgacgctctcgag
gagggcgacagtgttctagtgtcggcgcacacgtcggcaggtaagactaccgtggcgctc
tacgccatcgccaaggctctgcgagagaagaagcgcatcatttacacctcccccatcaag
gcccttagcaaccaaaagttccgcgagttctccgagaagttcgactccgtcggtctcatg
accggcgacaccaccatcaaggcggacgcggactgccttgtcatgacgacagagattcta
cgcagcatgctgtaccgcggcaccgaaatgctgcgcgaggtgggctgcgtcgtcttcgat
gaggtacactacatgcgcgacaagtcgcgtggcgtggtgtgggaggaaacaatcagcttg
ctgcctgagggatgccagtacgttttcctctccgccaccatcccgaacgcgcgcgagttt
gcggactgggtggagaacatccatcccaccacaaaggtgcacgtcattcacacagagtac
aggccagtgccgctacagcactacttgtatccggctggggccgacggcatcttcctcatc
gtggatgaaaaaggcaaatttcgcgatgacaacttcggcaaggctatcgcgtcgatgggg
gcggagggcggcgcaaacggtgtgggtgcggcaggcccaggcaacggctcctccaaagac
ccgcgcgggaaccacaagggcagcggtggccgcagtcacggcgggttctcgcagtccatg
atggagatcgtcaagctcgtgatggatcgcaacatgtaccctgtgatcgtcttctccttc
gccaaggcggagtgcgagcgcaacgccctcgcgctctcgcgactgaacttcaataacacc
gaagaggatgctctcgtgatggaggtgttcaacaatgctatggagtcgctggcggaggag
gaccggaagctgcccgctattgagcatcttcaaccgctcctgaagcgcggtgtcggcatc
caccactccggtctccttccgattctgaaggaggttgtcgagattcttttccaggcgggt
ttggttaaggttctcttctccaccgagactttctcgatggggcttaacatgccggcccgt
accgtcgtcttcacctctgtcaagaagttcgacggtgagaagaaccgctacctcactggc
ggcgagtacattcaaatgtcggggcgcgccggccgtcgcggcctcgaccgcgtcggcgtt
gtgattaccatggtggacgaggcagtggagcctgacacgctgaagcagctgaccagcggt
ggcgccgacgtcctgctcagcagtttccacctgacgtacaatatggtgctgaacctgctg
cgcgtcgagggcgtcgatcctgagtttatgatgaagcgcagcttctcgcaattccagcgc
ctgcgtgagaagccagcgctagaggagaagggtgccgctctgcgcaggtccatcgaggcg
atcaacgtcacccacgagagcgccttccggcagtacacgatttgcgaggacatgatcgcg
aagaagaggaacgaggtggaccacattctgcgccaacccaagttcctcaagaactgggtg
caggcaggccgttttgtgcacatcattcgcgcctccgatcagcgcgactttggttggggc
atctgccgctcgtttgccgcaaagagcacgaacccaaacttcagcgaccccagcaccttc
tccatccaagccgctgtgatatgcatgaaggcggacgcgtcgaatccgagcgctttgacg
ccgtgcccggtcagcgagtacacctcggagaaggcggacctatacacagtgacgttcgac
ttctcggacgtgcagtgcctttcaacgctcaagacaaatcttcccgaaagcccggactcg
gagcgggggcgtgccgaggtggtgcaaattctgtcgaagctgcagcgccagtttggtcac
gacatccccgtgctcacctctgcgcagatgggtgccgaggacgcgcagctgagtaagctg
cagacgcagctgtcgaacctgcaaaagcagctagagggcaacatccttgccatatccccc
accccagagctgcaggaggagtttgagaagtacaagcgaaaggcagacctcgaggctcag
ctggagcaggtgaagggtgagctagctggcatgggcaaggcggtcttctccgaagagctg
aagcagatgatgcgtgtgctgcgtcgcctggactacatcgacaaggacaacatcatcctc
cgcaaggcccgcgtagcgtgcgagataacgacaacagacgaaaacgaaattctgctgacg
gagctgctcttcaaaggcgtgctgaactcgatggagacggagatgattgtggctctctta
tcatgtctcgtcaacgtgcaccgcaccccggatggcttctcgttgccgcaggagttcgag
cagccgctgaaggacctcaacgagattgttactcgcatcgccaccgttagcgccgaaagc
gggctaatccaagaagacagctcggaggagaaggttatgccgtcactcatggaggtaatc
tacctgtgggcaaagggggcgaagttcgtcgatctcgtgagcatgaccacggcgtacgag
ggtgacattgtgcgcacgatgcgtcgtctggaggagatgctgcgccagctggcctccgca
gcgcggtcgccggccatcggcagcatcgaattgcacgaaaagttcctcaagggcatccag
ctcatcaagcgtgatatcgttttcgcgtcatcactgtacttgtag
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