Lapidilactobacillus dextrinicus: LH506_03385
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Entry
LH506_03385 CDS
T06302
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ldx
Lapidilactobacillus dextrinicus
Pathway
ldx02020
Two-component system
ldx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ldx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LH506_03385 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LH506_03385 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ldx03021
]
LH506_03385 (rpoN)
Transcription machinery [BR:
ldx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LH506_03385 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
TPR_Atp25_C
HTH_10
LEM
Motif
Other DBs
NCBI-ProteinID:
QFG46543
LinkDB
All DBs
Position
693079..694383
Genome browser
AA seq
434 aa
AA seq
DB search
MEHQQLGFSQKQQQKLKLSQTMRQSIMMLQLDTPDLIHYLKTQSLENPFMEVRTAFDHLT
PHSIGMPQYFDYANRCENNLYDYLLEQITFMTWSINIKKVVRYLITQLEPTGYLTISNEV
MMNEQHISETDAQKARKLLQQLDPPGVGASTLQECLLIQASESNSKYAALAEKIIKDSFS
QLLEHHTDELQELLKLTKNEVDSSLRLIRSFYATPGELFGKSQVNYVIPELVMKVKHDKI
SLTLTRYGKPELLFAAESFKQFQKHQEKDIQEYLRLKKDNFLSVKAALEQRQATLVLISK
QLIHHQADYLRGYSEFPRPLLLNEVAHELHINESTVSRAIHGVYMETPVGVIPLKALFAR
YSNGKGNKSVEELMLTIKDLVTKESKTSPLTDEDLAGQLCEHGFDVARRTVAKYRIKMGI
PSTRQRRKQKNNNQ
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcaacagttaggcttttcgcaaaaacaacagcaaaaactaaaattgtcacaa
actatgcggcagtcaattatgatgttacagctggatactcctgacttaattcattactta
aagacgcaaagcttagaaaatccattcatggaagtgcggacagcattcgatcaccttacg
ccccattcaattggaatgcctcagtattttgattatgcaaatagatgtgaaaataatttg
tatgattatttacttgaacaaattacttttatgacttggtcgataaatattaaaaaagta
gttcgatatttaattactcagctcgaacctactggctatttaactattagtaatgaagtt
atgatgaacgaacaacatatttcggagactgatgcacaaaaagcacgaaagttacttcag
caattagatccaccgggtgttggtgcttcaactttacaagaatgcttgttgatacaagct
agtgaaagtaacagtaaatatgcagcattagctgaaaagataattaaggatagtttttct
caattgcttgaacatcatactgatgagcttcaagagctattgaagttaactaagaatgaa
gttgattcctctttaaggttaatcagatcattttatgcaacacctggagaattatttggc
aaaagccaggttaactacgttattcctgaattagtaatgaaagttaaacacgataaaatc
agtttaacgctaacacggtatgggaaacctgaattattatttgctgctgaaagttttaaa
caatttcaaaaacatcaagaaaaagatattcaagaatatctgcgcctgaaaaaagataat
tttttatccgttaaagcagcacttgaacagcgacaagctactttggtattaatatcaaaa
caattaatacatcatcaggctgattacttacgtggttacagtgaatttccacgaccactg
ttacttaatgaagttgcacatgagcttcatattaatgaatcaaccgttagtagagctatt
cacggagtctatatggaaacccccgtcggcgtgattcccttgaaggcgttatttgcccgc
tacagtaatggtaaagggaacaaatccgttgaagaactaatgctaacgattaaggatttg
gtaacaaaagaatcaaaaacatcgccattaaccgatgaagatctagcaggtcaactttgt
gaacatggttttgatgttgctcgtcgtacagttgcaaagtatagaataaaaatgggaatt
ccaagtacaaggcaaagaagaaaacagaaaaataataatcaataa
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