Lapidilactobacillus dextrinicus: LH506_07385
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Entry
LH506_07385 CDS
T06302
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ldx
Lapidilactobacillus dextrinicus
Brite
KEGG Orthology (KO) [BR:
ldx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldx03019
]
LH506_07385
03009 Ribosome biogenesis [BR:
ldx03009
]
LH506_07385
Enzymes [BR:
ldx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH506_07385
Messenger RNA biogenesis [BR:
ldx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH506_07385
Ribosome biogenesis [BR:
ldx03009
]
Prokaryotic type
rRNA helicases
LH506_07385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFG47249
LinkDB
All DBs
Position
complement(1463262..1464605)
Genome browser
AA seq
447 aa
AA seq
DB search
METTFATFNLKDSLVAGLAKIHFTKPTPVQEQVIPILLKGQDAIVQSQTGSGKTHAFLLP
FFSQLKVNQDLPQLVITSPSRELANQTYELAKQLLEASGETFRMHLYVGGSDKERQIEKL
SHQQPDIVIGTPGRILDLISSSALRVDQVRFLVIDEADMTLDMGFLKDVDAIASKMPEQL
QTAVFSATIPDKLQPFLRKYLNAPQQVKLAPKSVINPNVQNWLFATRGKNKADLVAKLLT
VGQPYLALVFTNTKKTADELTAKLKSKGFKVAKIHGGLQPRERKRIMKQVENLEYQYVVA
TDLAARGIDIPGASLVINYEIPKDLEYFVHRVGRTGRNGLEGTAITLYGPDDEHQVSEIE
ALGIKFTPKALANGQIVDSYDRRRRTNRQATKEKLDPKMVGMVKKQQRKHKPGYRNKIKK
ALSEDRRAKRKIENRQEQRAIRRSHKR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacatttgcaacatttaatttaaaagattcattggtagcgggtttggcaaaa
atccattttactaaaccaacaccagttcaagaacaggtcattccaattctgttaaagggt
caggatgccattgttcaatcacaaacgggtagtggcaagactcacgcctttttattacca
ttctttagtcagttaaaggtaaatcaagatttaccacaattagttattacatcaccaagt
cgtgaattagccaatcaaacttatgaattggccaaacagttattagaggctagtggcgaa
actttccggatgcatttatatgttggcggtagtgacaaggaacgccagattgaaaaactg
tctcatcaacaaccagatattgtcattgggacgcctggtcgaattctagatttaatttct
agttccgcattacgtgtcgatcaagttcgtttcttagtgattgatgaggccgatatgaca
ttagatatgggcttcttaaaagatgttgacgcgattgccagtaaaatgcccgaacaatta
cagaccgccgtcttctcggcaacaattcctgataagttacaaccatttctacgtaaatat
ttaaatgcaccccaacaagtaaaattagcacctaaatcagtcatcaaccccaatgttcaa
aactggttatttgcgactagagggaagaataaagcagatttagtagccaaattattaacc
gtgggtcagccctatttagctttggttttcaccaatacgaaaaaaactgcagacgaatta
acggctaaattaaagtctaagggcttcaaagttgctaaaattcatggcggtttacagcct
cgtgagcgtaaacgcattatgaagcaagttgaaaacttagaatatcaatacgttgttgct
actgatttagctgctcgaggaattgatattcctggggcctcacttgtcatcaactatgaa
attccgaaggatttagaatattttgttcatcgagttggccgaactggccgtaatggtctt
gaaggtactgcgattactttgtatggtcctgatgacgagcatcaagttagtgagattgaa
gcattaggcattaagtttacacctaaggctttagctaacggtcaaattgttgattcttat
gatcgcagacgtcggactaatcgccaggcaactaaagagaaacttgatcctaaaatggtc
ggcatggttaaaaagcaacaacgcaaacataagccaggctatcgtaataagattaagaaa
gctttgtctgaagatcgccgtgctaaacgtaagattgaaaatcggcaagagcaacgggca
attcgacggtcacataagcgatga
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