Leclercia sp. J807: GNG26_00965
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Entry
GNG26_00965 CDS
T06440
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lea
Leclercia sp. J807
Pathway
lea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GNG26_00965 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lea03021
]
GNG26_00965 (rpoC)
03400 DNA repair and recombination proteins [BR:
lea03400
]
GNG26_00965 (rpoC)
Enzymes [BR:
lea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GNG26_00965 (rpoC)
Transcription machinery [BR:
lea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GNG26_00965 (rpoC)
DNA repair and recombination proteins [BR:
lea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GNG26_00965 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
QGU08994
LinkDB
All DBs
Position
201204..205427
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINREGKEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLNEQWCDLLEVNSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTSGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRDLEANGKIGASFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEIPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgactgcccacatctggttcctgaaatctctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctctac
ttcgaatcctatgtggttatcgaaggcggcatgaccaatctggaacgtaaccagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagcgatccaggccctgctgaagagcatggatctggagcaggagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacatctgacctgaacgatctctatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtctgggtatccaggcatttgagccagta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctactaacaacatcctgtctccagcgaacggtgaaccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatatgaaaaagatgaaaac
ggtgaattcgttgcgaaaaccagcctgaaagacacgaccattggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggtctgaagccgactgttatcttc
gctgaccagacaatgtacaccggctttgcatatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtcatcccagagaagaaacacgagatcatctctgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgcaggcgaacgctataac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcagactgaaacggtaatcaaccgtgaaggtaaagaagagcagcaggtctccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagctaactccggttatctgacgcgtcgtctg
gtagacgttgcgcaggacctggttgttaccgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgaccgctgaagacgttctgaagccgggcactgcagacattctggttccgcgt
aacactctgctgaacgagcagtggtgtgatctgctggaagtgaactctgttgactccgtg
aaagtacgttccgttgtatcctgtgacaccgactttggtgtttgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggtgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gctgtgatggcgaaaggcgacggcgagcaggttgcaggcggcgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcaccgaagtggcgggcttcattcgctttaccgatatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggtctctcttctctggtg
gttctggactctgcagaacgtacctcgggtggtaaagatctgcgtccggccctgaaaatc
gttgatgctaacggcaacgacgttctgatcccaggcaccgatatgccggctcagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtatcatctccttcggtaaagagaccaaagggaagcgccgtctggtgatcacgccgctg
gatggcagcgatccgtacgaagagatgattccaaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgtcttcgtggcgtacacgcggtaacgcgttacatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgtgaatgccggtagctccgacttcctcgaaggtgagcaggtt
gaatactctcgcgttaagattgctaaccgcgatctggaagcgaatggcaaaatcggtgcg
tccttcgcgcgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
actggttatgcctaccaccaggatcgtatgcgccgtcgcgcagcgggcgaaatccctgct
gcgccgcaggtaactgctgaagatgcctctgccagcctggcagagctgctgaacgcaggc
ctgggcggttctgacaacgagtaa
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