Leclercia sp. W17: DVA44_03345
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Entry
DVA44_03345 CDS
T05987
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lee
Leclercia sp. W17
Pathway
lee02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lee00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DVA44_03345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lee03021
]
DVA44_03345
Transcription machinery [BR:
lee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DVA44_03345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
YicC-like_N
D27-like_C
Motif
Other DBs
NCBI-ProteinID:
AXF63238
LinkDB
All DBs
Position
complement(663604..665580)
Genome browser
AA seq
658 aa
AA seq
DB search
MPNIDRVDPDSRTERQRQKYKYALALKVGSRIADTNQTNKCGYRLMEQNPQSQLKLLVQR
GKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLAENSNNTD
EDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS
VAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTATHVGSELSQEEMDDD
EDEDDGDDDSSDDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEV
FKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKVCVEQCKMPKKNFITLFTGNETSETW
FNAAIAMNKPWSEKLRDVAEEVHRGLQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRA
KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR
KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE
AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaatatcgatcgggtagatcccgacagccgcactgagaggcagcggcaaaaatac
aagtacgccctcgctttaaaggttggcagccgtatcgccgacaccaatcaaacgaataag
tgtggataccgtcttatggagcaaaacccgcagtcacagctgaaacttcttgtccaacgt
ggtaaggagcaaggctatctgacctatgccgaggtcaatgaccatctgccggaagatatc
gtcgactccgatcagatcgaagacatcatccaaatgatcaacgacatgggtattcaggtg
atggaagaagcccctgatgccgatgatctgttacttgctgaaaactcaaacaacaccgac
gaagatgcagaggaagctgctgcacaggttctgtcgagcgttgaatctgaaatcggccgc
accactgacccggttcgcatgtacatgcgcgaaatgggtaccgttgaactgttgacccgc
gaaggcgaaattgacatcgctaaacgtatcgaagacgggatcaaccaggttcagtgttcc
gttgccgaatacccggaagcgatcacctatctgctggagcagtacgatcgcgttgaggca
gaagaagcccgcctgtccgatctgatcaccggttttgtcgatccgaacgcagaagaagac
atggccccaacggcgacgcacgtcggttctgaactctctcaggaagagatggatgatgac
gaagacgaagacgatggcgatgacgacagcagcgatgacgacaacagcatcgaccctgaa
ctggctcgcgagaagttcgctgaactgcgcgcgcagtatgtcgttacccgcgacacgatc
aaagcgaaaggccgcagccacgcagccgctcaggaagagatcctgaagctctctgaagtg
ttcaaacagttccgtctggtgccaaaacagttcgattacctggtaaacagcatgcgcgtg
atgatggatcgcgtacgtacccaggaacgcatcatcatgaaggtgtgcgttgaacagtgc
aaaatgccgaagaagaacttcatcaccctgttcaccggtaacgaaaccagcgagacctgg
ttcaacgctgctatcgcgatgaacaagccgtggtctgaaaaactgcgcgacgtggctgaa
gaagtacatcgtggcctgcagaagctgcagcagattgaagaagagaccggcctgaccatc
gagcaggtaaaagacatcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcg
aagaaagagatggtcgaagcgaacttgcgtctggttatctctatcgccaagaagtacacc
aaccgcggtctgcagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcg
gttgataagttcgaataccgtcgtggttacaagttctccacctacgcaacctggtggatc
cgtcaggctatcacccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcat
atgattgagaccatcaacaagctcaaccgtatctcccgccagatgttgcaggagatgggt
cgcgagccgacgccagaagagctggccgagcgcatgctgatgccggaagacaagatccgt
aaggtgctgaaaatcgctaaagagccaatctccatggaaacgccaatcggtgatgatgaa
gattcgcatctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgcc
accaccgagagcctgcgtgccgccacccacgacgtactggctggcctgactgcccgtgaa
gcgaaagttctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagag
gtgggtaaacagttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctg
cgtaaactgcgccacccgagccgctctgaagtgctgcgtagcttcctggacgactaa
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