Leclercia sp. W17: DVA44_15040
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Entry
DVA44_15040 CDS
T05987
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lee
Leclercia sp. W17
Pathway
lee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVA44_15040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lee03019
]
DVA44_15040
03009 Ribosome biogenesis [BR:
lee03009
]
DVA44_15040
Enzymes [BR:
lee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DVA44_15040
Messenger RNA biogenesis [BR:
lee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DVA44_15040
Ribosome biogenesis [BR:
lee03009
]
Prokaryotic type
rRNA processing factors
DVA44_15040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AXF65324
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All DBs
Position
3025061..3028276
Genome browser
AA seq
1071 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARLGGVRCVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYMLPKLHEEAMALPSEEEYSERKLPEQPALAAFVMPEAPPA
PAQETVAAKPAAKPAAEVSQPAEQPGLLSRFLSALKKMFAGEEPQLAPAPVEKKEEKQER
SPDRRKRQNNRRDRNERRDNRSESNEGREGSESRDNRDNREGRERREGRDENRRNRREKP
QQNAEEREIRQPVSEESDKGRQRDEQQPRRERNRRRNDDKRQAQQEVKALNRDEETAQDT
EQEERVQVMPRRKQRQMSQKVRFQSQAEEAAVEAIAPQAEPAQRTELAKIDLPAVIENAP
EQEENAEGRENAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLAIACASPEMASG
KAWIRYPVARPQEPQFEEQNVAQETATPVTPVAVEAIADAAAVVIPEPQVVEIETSHPEV
IAAPVTEQPQIVTPDDAVVAKQIAEDAAVAEPAVEEAAAVESAETTEAAVEPQPVVEVEV
ETEVQPEIEIDVEPVEAAEVEPEVTDVAHVDEPEVKPVPAVKPAPAAQVHAEAHHATAPM
TRAPAPEYVPEAPRQSDWVRPAFEFDGKGSAGGHSATHHATAPATRPQPAE
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaacccagccttgaggccgcatttgtcgattac
ggtgccgagcgtcatggtttcctcccgctgaaagagatcgctcgcgagtacttcccttcc
aactataatgcccatggccgtcctaacatcaaagatgttctgcgtgaaggtcaggaagtt
attgtccagattgataaagaagagcgtggcaacaaaggcgctgcactgactacctttatc
agcctggcaggcagctacctcgtactgatgccaaacaacccgcgcgcggggggtatctct
cgccgtatcgaaggggatgaccgtaccgagctgaaagaagcgctggcaagcctggagctg
ccagacggcatgggcctgattgttcgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggacctgggcttccgtctgaagcactgggaagcgattcagaaagccgctgaaagc
cgccctgctccgttcctgatccaccaggaaagtaacgttatcgtgcgtgccttccgcgac
tatctgcgtcaggatattggcgaaattctgattgataacccgaaagtacttgagctggct
cgccagcacattgccgcactgggtcgtcccgatttcaccagcaaaatcaaactgtacacc
ggtgagatcccgctgttcagccactaccagattgaatcgcagattgaatccgccttccag
cgtgaagtccgtctgccatccggtggttctatcgttatcgacagcaccgaggcgctgacc
gccatcgacatcaactccgcacgtgcaacccgcggtggcgatatcgaagagacggccttc
aacaccaacctggaagcggccgatgagattgcccgccagctgcgtctgcgtgacctgggc
ggcctgatcgttatcgacttcatcgacatgacgccggtacgtcaccagcgcgcggtggaa
aaccgcctgcgtgaagcggtgcgtcaggatcgtgcacgtatccagatcagccatatttcc
cgttttggcctgctggagatgtcccgccagcgtctgagcccgtcactgggtgaatccagc
caccacgtctgcccacgctgtagcggtaccggcaccgtgcgtgacaacgaatcgctgtcc
ctctctatcctgcgtcttatcgaagaagaggcgctgaaagagaacaccaaagaagttcac
gccattgtgcctgtgccgattgcctcctacctgctgaacgaaaaacgtgccgcggtaagt
gcgatcgaagcccgtctgggcggtgtacgctgcgtgatcgtgcctaacgatcagatgcag
accccgcactactccgtgctgcgcgtgcgcaaaggcgaagagacctccaccctgagctac
atgctgcctaagctgcatgaagaggcgatggcgctgccgtccgaggaagagtactcagag
cgtaaactgcctgaacagcctgcactggcagcgtttgtgatgccagaagcaccgcctgcg
ccagcgcaggagaccgtggcggctaaacctgcagccaaaccggcggcagaagtgagccaa
ccggctgaacagcctggtctgctgagccgcttcctcagtgcgctgaagaagatgttcgcg
ggtgaagagccgcagcttgccccggcaccggttgagaagaaagaagagaaacaggagcgt
tccccggatcgtcgtaagcgtcagaacaaccgtcgtgaccgcaatgagcgccgcgataac
cgttcagagagcaacgaaggccgtgaaggcagcgaaagccgtgacaatcgtgataaccgc
gaaggtcgcgagcgccgtgaaggacgtgacgaaaaccgtcgcaaccgccgcgagaagccg
cagcagaacgcggaagagcgtgaaattcgccagccggtcagcgaagagtctgacaaaggc
agacagcgcgatgagcagcagccgcgccgcgaacgtaaccgtcgtcgtaacgatgacaag
cgtcaggctcagcaggaagttaaagccctgaatcgcgacgaagagaccgctcaggatact
gaacaggaagaacgcgttcaggtaatgccgcgccgtaagcagcgtcagatgagccagaaa
gtgcgtttccagtctcaggctgaagaagcagcggttgaagcgatcgcgccacaggccgaa
ccggcacagcgcaccgagctggctaaaattgatctgcctgcggtgattgaaaacgcacct
gagcaagaagaaaacgctgaaggtcgtgaaaacgccggcatgccgcgccgttcacgtcgc
tctccgcgtcacctgcgcgtgagtggtcagcgtcgccgtcgttatcgtgacgagcgttat
ccgctgcagtcgccaatgccgctggctattgcctgtgcctcaccagaaatggcatccggt
aaagcctggatccgttatccggtagctcgccctcaggagccacagtttgaagagcagaac
gtcgctcaggaaactgcaacccctgttacgccagtcgcggttgaagcgatcgctgacgct
gctgccgttgtgatcccagagccgcaggtggttgaaatcgaaacttcacatccagaagtg
attgctgcgcctgtgacagaacaaccacagatcgtcactcctgacgatgcggtcgtcgcg
aagcagattgcagaagatgctgccgtagctgaacctgctgtcgaagaagccgctgccgtt
gaatcggctgaaaccaccgaagcagccgtcgagccgcagccggtcgtggaagttgaagta
gaaacggaagttcaacctgagattgaaatcgatgttgaaccggttgaggcagctgaagtg
gaacctgaagtcactgacgtcgctcacgtcgacgagccagaagtgaagccggttcctgca
gtgaagccagcgccagccgctcaggttcatgctgaagcccatcacgcgacggccccaatg
acccgtgcaccggcaccggaatatgttccggaagcgccgcgccagagtgactgggtacgt
ccggcatttgaatttgacggtaaaggctctgcaggtggtcacagtgccacccatcacgcc
acggcgccagccacgcgtccacagccagctgaataa
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