Leclercia sp. W17: DVA44_20310
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Entry
DVA44_20310 CDS
T05987
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
lee
Leclercia sp. W17
Brite
KEGG Orthology (KO) [BR:
lee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lee03021
]
DVA44_20310
Transcription machinery [BR:
lee03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
DVA44_20310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXF66272
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All DBs
Position
4088753..4091659
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPATGENRLYARNDSPVTRVMFNPGDT
VTSHEGWQLKIEDVKEENGLLAYIGTRLDTEETGVMLREVLLDSKLVFSKPQDRLFAGQI
DRMDRFSLRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH
DADNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDIMVVDEAHHLVWNVDAPSREYMAIE
QLAERVPGVLLLTATPEQLGLESHFARLRLLDPNRFHDFDLFVEEQKNYRPVADAVALLL
AGKHLSNDELNTLSDLIGEQDIEPLLQAANSDREGADAARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTVRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGD
TGTWWNFDPRVEWLMGYLTANRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFSEEDSGAQVLLCSEIGSEGRNFQFASRLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWFHEGLDAFEHTCPTGRTIYDSVHNELTGYLAAPENT
EGFDELIKTCREQHDALKAQLEQGRDRLLEIHSNGGEKAQRLAESIEEQDDDTSLISFAM
NLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATP
VRLLLDKNGTNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVYAILQQGESQVEKAAR
ALIDAARSEADEKLSAELSRLEALRAVNPNIRDDELAAIETNRQQVLESLNQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttggattagga
acggtagtggcgctggatgcgcgtatggtcactctcctcttccccgccaccggtgaaaac
cgtctgtatgctcgcaatgattcccctgttacccgcgtgatgtttaacccgggcgacacc
gttaccagccatgaaggctggcagctgaagattgaagacgtaaaagaagagaatggactg
ctcgcctatatcggaacccgactggataccgaagagacgggcgtcatgctgcgcgaagtg
ctgctcgacagcaaactggtcttcagcaagccgcaggatcgcctgttcgccggtcagatc
gaccgcatggatcgcttctcgctgcgctaccgtgcgcgcaagttccagagcgagcagtac
cgcatgccgtggagcggtctgcgcggccagcgcaccagcctgattccccatcagctcaac
atcgcccatgacgttggccgccgccatgcgccgcgcgtcctgctggcggatgaagtcggt
ttaggtaaaaccatcgaagcgggcatgatcctgcaccagcagctgctctccggcgcggcc
gagcgcgtgctgattgtggtgccagaaaccctgcagcaccagtggctggtagagatgctg
cgtcgcttcaacctgcgtttctccctgtttgacgacgagcgctacgccgaagcccagcac
gacgccgataacccgttcgaaaccgaacagctggtgatctgctccctggacttcgtgcgc
cgcagcaagcagcgtcttgagcacctctgtgatgccgagtgggacatcatggtggtcgat
gaagcgcaccatctggtgtggaacgtcgacgcgccgagccgtgaatatatggcgattgaa
cagctggccgagcgcgtacctggcgtactgctgctcaccgctacgccggaacagctgggt
ctggagagccacttcgcgcgtctgcgcctgctggacccaaaccgtttccatgactttgac
ctctttgtcgaagagcagaaaaattatcgcccggtggcggatgctgttgccctgctgctg
gcgggcaagcacctctccaacgacgagctcaacaccctgagcgatctgattggcgaacag
gatatcgagccgttactccaggcggccaacagcgatcgtgaaggcgccgacgccgcacgc
caggagctggtctccatgctgatggacaggcacggcaccagccgcgtgctgttccgtaac
acccgtaacggggtgaaaggcttcccgaaacgcgagctgcataccgttcgtctgccgctg
cccacccagtatcaaacggcgatcaaggtctccggcatcatgggcgcacgcaaaacagcg
gaagagcgcgcccgggacatgctctatccggaacagatttatcaggagtttgaaggcgat
actggcacctggtggaacttcgacccgcgcgttgaatggctgatgggttatctgaccgcc
aaccgttcccagaaagtgctggtcatctgcgccaaagccaccaccgcgctgcagcttgag
caggttctgcgcgagcgggaaggtattcgcgcggcagtgttccatgaaggcatgtccatt
atcgagcgcgaccgcgcggcggcgtggttctccgaagaggacagcggcgcccaggtgctg
ctctgctctgagatcggctccgaggggcgtaacttccagttcgccagccgtctggtgatg
ttcgatttaccgttcaacccggacctgctggagcagcgtattggtcgtctggaccgtatt
ggtcaggcgcacgacattcagatccacgttccgtatctggaaaaaaccgcccagtcggtg
ctggtgcgctggttccacgaagggctggatgcgtttgaacatacctgcccgaccggtcgt
accatttacgatagcgtgcataacgagctgacgggctatctggcggcgccggaaaacacc
gagggctttgacgagctgatcaaaacctgccgtgaacagcatgacgccctgaaagcgcag
ctggagcagggtcgtgaccgtctgctggagatccactccaacggcggtgaaaaggcccag
cggctggcagagagcattgaagagcaggatgacgataccagcctgatcagcttcgccatg
aacctgtttgatatcgtcggtatcaaccaggacgatcgcggcgagaacttgattgtgctg
accccgtccgatcacatgctggtgccggactttccgggcctgccggaagatggttgcacc
atcaccttcgagcgtgatgtggcgctctcccgcgaggatgcgcagttcatcacctgggag
cacccgctgatccgcaacggtctggatctgatcctctccggcgacaccggcagcagcacc
atctcgctgctgaagaataaggcgctgccggtgggtaccctgctgctggagctgatctac
gtggtggaggcccaggcgccgaaacagctgcagctcaaccgtttcctgcctgccacgccg
gtacgtctgctgctggataaaaatggcaccaacctggcggcgcaggtcgagtttgagagc
tttaaccgccagctgagcgcggtgaatcgccataccggcagtaagctggtgaatgcggtg
cagcaggatgtctacgccatcctccagcagggtgagtctcaggttgagaaagcggcgcgc
gccctgattgacgcggcgcgcagcgaggcggatgaaaaactgtcggcggagctctctcgt
ctcgaggccctgcgtgcggtgaacccgaatattcgtgacgatgaactggcggcgattgaa
accaatcgtcagcaggtgcttgagagcctgaatcaggcgggatggcgtctggatgcgctg
cgccttatcgttgtgacgcatcagtaa
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