KEGG   Lelliottia jeotgali: LJPFL01_0404
Entry
LJPFL01_0404      CDS       T05035                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
lef  Lelliottia jeotgali
Pathway
lef02024  Quorum sensing
lef03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lef00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LJPFL01_0404
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LJPFL01_0404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lef03019]
    LJPFL01_0404
   03036 Chromosome and associated proteins [BR:lef03036]
    LJPFL01_0404
Messenger RNA biogenesis [BR:lef03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LJPFL01_0404
Chromosome and associated proteins [BR:lef03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LJPFL01_0404
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ASV53767
LinkDB
Position
430584..430895
AA seq 103 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTGSNFHHGSNAQGSSAPAQDSEETE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcttgaacgcattgcgtcgtgaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaaggccagattgagtctttcgat
cagttcgtgattctgttgaaaaacacggtcagccagatggtgtataagcacgctatttct
actgttgttccgtcccgtccagtatctcatcacagcaacaacgctggcggtggcaccggt
agtaatttccatcatggcagcaacgcacagggctcttctgcacctgcgcaggacagcgaa
gaaaccgagtaa

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