Lelliottia jeotgali: LJPFL01_1621
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Entry
LJPFL01_1621 CDS
T05035
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lef
Lelliottia jeotgali
Pathway
lef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJPFL01_1621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lef03019
]
LJPFL01_1621
03009 Ribosome biogenesis [BR:
lef03009
]
LJPFL01_1621
Enzymes [BR:
lef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LJPFL01_1621
Messenger RNA biogenesis [BR:
lef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LJPFL01_1621
Ribosome biogenesis [BR:
lef03009
]
Prokaryotic type
rRNA processing factors
LJPFL01_1621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ASV54984
LinkDB
All DBs
Position
complement(1760513..1763680)
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVSAVETRQGGVRCIIVPNDQMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMAMPSDAEPAERKLPEQPALATFIMPEAPPA
PALEQAPAKSAVQKPAAEANATPSEPGLLSRFFGALKKMFASEEPQPEQPKVAPKEEKQE
RPQDRRKRQNNRRDRNDRNDRNDRRDNRDNRDNRDNRSDNNEGRETREDNRRNRREKPQQ
QKVEDREIRQTAGDESENTRQRDDQQQPRRERNRRRNDDKRQAQQEAKVVNTEAPVEQDA
EQEERVQVMPRRKQRQLSQKVRFQTEQSEVIAPVVEPVVETAQNTQLAKLDLPAVVEATP
EHDDNGEARDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVFIRYPIARPQEQQFEEQNVAPEAIEPIVAAPVEVAEAAAVVVEETQQVVAEPQPVVES
APVIEPQPVVETAEIETTHPEVIAAPVDEQPQFIAQEDTVVAEQVAEEAQPAEAVVEEEV
VTEAVVEQPVEVTPEPQAPTPAPVVKPEPVVAAVVEHHYATAPMTRAPAPEYVPEAPRHS
DWVRPAFDFDGRGSAGGHSATHQATAPATRPQPAE
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaggccgcattcgtcgattac
ggcgctgagcgtcacggtttccttcctctgaaagagattgcccgcgaatacttccctgcc
aattacaactcccacggtcgtccgaacatcaaagatgtgctgcgcgaaggccaggaagtt
atcgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctgaccacctttatc
agtctggcaggcagctatctggttctgatgccgaacaacccgcgtgcgggcggtatctcc
cgccgtatcgaaggcgacgaccgtaccgagctgaaagaagcgctggcgagcctggaactg
cctgatggcatgggcctcatcgtgcgtaccgcaggcgttggcaaatctgccgaagcgctg
cagtgggacctgggtttccgtctgaagcactgggaagccatccagaaagcagcagaaaac
cgcccggcgccattcctgatccaccaggaaagtaacgtcattgtacgtgcgttccgtgac
tacctgcgccaggacatcggcgagatcctgatcgataacccgaaagtgcttgagctggct
cgccagcacatcgcagcgttgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatctcagatcgaatccgccttccag
cgtgaagtgcgcctgccttctggcggttctatcgttatcgactccaccgaagcgctgacc
gctatcgacatcaactccgcacgcgcaactcgcggcggcgatatcgaagaaacggccttc
aataccaaccttgaagctgcagatgaaattgcccgtcaacttcgtctgcgcgacctgggc
ggcctgatcgttatcgacttcatcgacatgactccggttcgccatcagcgcgccgtggaa
aaccgtctgcgtgaagccgttcgtcaggatcgtgcacgtatccagatcagccatatttct
cgctttggcctgctggaaatgtcgcgtcagcgcctgagcccgtcactgggtgaatcaagc
catcacgtctgccctcgctgtagcggtacgggtaccgtgcgtgacaatgaatctctctct
ctctccattctgcgtctcatcgaagaagaagcgctgaaagagaataccaaagaggttcac
gcgattgttccagtacctattgcctcctatctgctgaacgaaaaacgtgaagcggttagc
gccgttgaaacgcgtcagggcggcgtgcgctgcatcatcgtgccaaacgatcagatgcaa
accccgcactactctgtcctgcgcgtgcgcaaaggcgaagagaccagcaccctgagctac
ctgctgccgaaactgcatgaagaagagatggcaatgccgtctgatgcagagcctgccgag
cgcaaactgcctgaacagccggcgctggcgactttcatcatgccagaagcgcctccggct
cctgccctggaacaagcaccagcgaaatctgctgtgcagaaacctgcggcagaagctaac
gctacaccgtctgaacctggcttgctgagccgtttcttcggcgcactgaagaaaatgttc
gccagcgaagaacctcaaccggaacaacctaaagttgcgccgaaggaagagaagcaagag
cgtccgcaggatcgtcgtaaacgtcagaacaaccgtcgcgatcgtaatgaccgtaacgat
cgtaacgatcgccgcgataatcgtgacaaccgcgataatcgcgataaccgttcagacaat
aacgaaggtcgcgagacccgcgaagacaaccgtcgcaaccgtcgcgagaagccacagcag
caaaaagtggaagatcgtgaaatccgccagacagcgggcgatgagtctgaaaacaccaga
cagcgtgacgaccagcagcagccgcgtcgcgaacgtaaccgccgtcgcaatgacgataaa
cgtcaggcgcagcaggaagcgaaagttgttaacaccgaagcgccggttgagcaagatgct
gagcaggaagaacgcgtccaggtcatgccgcgccgtaagcagcgtcaactgtcgcagaaa
gttcgtttccagactgagcagtctgaggttatcgcccctgttgttgaaccggttgttgaa
accgcccagaacacacagctggcaaaactggatctgcctgcagttgttgaagcgactcct
gagcacgatgacaacggtgaagcacgtgataacaacggtatgccacgtcgctcccgtcgc
tctccgcgccacctgcgcgtgagcggtcagcgtcgtcgtcgctatcgtgacgagcgttac
ccaactcagtctccgatgcctctgaccgtggcctgtgcgtcaccagaattggcctccggt
aaagtctttatccgctatccgattgcacgtcctcaggaacagcagtttgaagagcaaaac
gtggcccctgaagccattgagccaatcgttgctgctccagttgaagtggctgaagctgcc
gccgttgtggttgaagagacacagcaggtcgttgctgaacctcagccggttgtagagtct
gcgccagttatcgagcctcagccggttgttgaaaccgctgaaatcgaaaccacgcatccg
gaagtgattgctgcgccggtagacgaacagccgcagttcatcgcccaggaagataccgtg
gtggctgaacaggttgcagaagaagctcagcccgctgaagcagtggtagaagaagaagtt
gtcacagaagcggttgttgaacagcctgttgaagtgactcctgagccacaagcaccgact
ccagccccggttgtaaaaccagagcctgttgttgccgcagtggttgaacatcactatgcg
actgcaccgatgacgcgtgctccagcaccggaatacgtaccagaagcgccacgtcatagt
gactgggtgcgccctgcgttcgatttcgatggccgtggttctgcgggtggtcatagcgcc
actcaccaggcaaccgctccggcgacacgcccacagccagctgaataa
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