Lelliottia jeotgali: LJPFL01_2015
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Entry
LJPFL01_2015 CDS
T05035
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lef
Lelliottia jeotgali
Brite
KEGG Orthology (KO) [BR:
lef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lef03019
]
LJPFL01_2015
Enzymes [BR:
lef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LJPFL01_2015
Messenger RNA biogenesis [BR:
lef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LJPFL01_2015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
T2SSE
nSTAND3
nSTAND_NTPase5
NACHT
ResIII
PhoH
SLFN-g3_helicase
NTPase_1
DUF6145
AAA_16
TsaE
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
ASV55378
LinkDB
All DBs
Position
2169015..2172917
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFPMLMQQLDTLMLRDKQRFARRLHGIKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPVIEYPQNLPVSQKKQEILEAVRDNQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVDVRYRPIVEEADDVDRDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQAHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPMGRQLSQLPVDPRLARMVIEAQKHGCVREAMIITSALSIQDPRERPMDKKQA
SDEKHQRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKVEYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHMALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWTIVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSLIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKTRRRDILVDDEALFEFYDQRISHDVVSARHFDSWWKKASKESPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLARVTPLELPLLDALEKELRRMSGVTIDRESW
HWDQVPDHLKITFRVVDDKNKKLNEGRSLSELKDALKGKVQETLSAVADDGIEQSGLHIW
SFGNLPDHYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWTEEGFAALHEK
VRAGLNETVVTIAKQVEQILTAVFNINKRLKGRVDMTMALALSDVKAQMGGLVYRGFVTG
NGFKRLGDTLRYLNAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWLNKLPPARRDDED
VQEIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQITA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattaaccttcccgatgctgatgcaacagctcgatacgctgatg
ctgcgcgacaagcagcgcttcgcacgccgtcttcatgggatcaaaaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagattgaacaggctgcagggaaa
gtcgtgctgcgtgaagcagcacgtccggtgattgaatacccgcaaaacctgccggtcagt
cagaaaaaacaggaaatcctcgaagccgttcgcgataaccaagtggtgattgtggccggt
gagacgggttctggtaaaaccacgcagctaccaaaaatttgtatggagctggggcgcgga
attaaaggcctgattggtcatacccagccgcgccgtctggcggcgcgtaccgtggcgaac
cgtattgccgaggagctgcaaacggagccgggtggttgcatcggctataaagtgcgtttt
agcgatcacgtcagcgacaacactatggtcaaactgatgaccgacgggattctgttggct
gaaatccagcaggatcgcctgctgatgcagtacgacaccatcatcatcgatgaagcgcac
gaacgcagtctgaatatcgatttcctgctgggctatctgcgtgaattactgccgcgtcgc
ccggatctgaaaatcattattacctccgcgaccatcgatccggagcgcttctcgcgccac
tttaacaacgcgccgatcatcgaagtctctggccgtacttatccggtggacgtgcgctat
cgtccgatcgtcgaagaggcggatgatgtcgatcgcgaccagctgcaggctatttttgac
gccgtcgatgagctgggccgtgaaagccccggcgacatcctgatcttcatgagcggtgag
cgtgaaatccgcgataccgccgacgccctaagcaaacgcgatctgcgccacacagagatc
ttaccgctctacgcccgcttgtcgaacagcgagcagaaccgcgttttccaggcgcacagc
ggacggcgcatcgtgctggcgaccaacgtcgccgaaacctcactgaccgtgccgggcatc
aagtatgtaatcgaccctggcaccgcgcgtatcagccgctacagctatcgcaccaaggtt
cagcgtctgccgatcgagccggtttcacaggcctctgctaaccagcgtaaaggccgctgc
ggtcgtgtttcggaaggtatctgtattcgcctgtattccgaagacgatttcctgtctcgc
ccggaatttaccgatccagagattctgcgtaccaacctcgcgtcggttattttgcagatg
acggctctggggctgggcgatatcgccgcgttcccgtttgtcgaagcgccggataagcgc
aatattcaggacggcgtgcgcctgctggaagagctgggcgctattaccactgacgaacag
gccactgcctacaaactgacgccgatgggccgtcagctgagccagctgccggtggacccg
cgtctggcgaggatggtgattgaggcgcaaaaacacggctgcgtgcgtgaggcgatgatt
atcacttcagcgctgtcgattcaggacccgcgtgaacgtccgatggacaaaaagcaggcg
tccgatgaaaaacatcagcgtttccacgacaaagagtccgatttcctcgcctttgtgaac
ctgtggaattacctcggcgagcagcaaaaagccctgtcgtcgaaccagttccgccgtcag
tgtaaggtcgaatatcttaactacctgcgcgtgcgcgagtggcaggatatttacacccag
ctgcgtcaggtggtgaaagagctgggcattccggtgaacagcgaaccggcagagtaccgc
gaaattcacatggcgctgctgaccgggttgctgtcgcacatcggtatgaaagacgccgat
aagcaggaatataccggcgcgcgtaacgcccgtttctccatcttcccaggttctggttta
ttcaagaaaccgccgaaatggaccatcgtggcagagctggtggaaaccagccgtctgtgg
ggccgtattgcagcgcgtattgatcctgaatgggtcgaacctgtcgcgcagcacctgctg
aaacgctcatacagtgaaccacactgggagcgggcgcagggcgcggtaatggcgaccgaa
aaagtgaccgtttacggcctgccggtcgttgcggcgcgtaaggtgaattacagcctgatc
gacccggcgctctcccgcgagctgtttatccgccacgcgctggtggagggcgactggcag
acacgtcacgccttcttccgtgaaaacctgaagctgcgcgccgaagtcgaagagctggaa
cacaaaacgcgccgccgcgacatccttgtggatgacgaagcgctgtttgagttttatgac
cagcgcatcagccacgacgtggtttctgcgcgtcacttcgacagctggtggaaaaaggcc
agtaaggaatcgccggatctgctcaactttgaaaagagcatgttgatcaaagagggcgcg
gagcaggtcagcaagctggactacccgaacttctggcatcagggcaatctcaagctgcgt
ctgacctatcagtttgaaccaggcgcggacgccgacggcgtgacagtccacattccgctg
ccgctgctcaatcaggtggatgagagtggttttgagtggcaaatcccaggcctgcgccgc
gagctggtgattgcgctgatcaaatccttgcctaaaccggttcgccgtaattttgttcca
gcgccaaactatgccgaggcatttttagcccgtgttacgccgctggagctgccgctgctc
gatgcactggagaaagagctgcgccgtatgtcgggggtgaccattgaccgcgaatcctgg
cactgggatcaggtgcccgatcatctgaaaatcaccttccgggtagtggatgacaaaaac
aaaaagctcaacgaaggccgctcgctgagtgaactcaaggatgcgctgaaaggcaaagtg
caggagacgctctcggcggtggcggatgacggcatcgagcagagcgggctgcatatctgg
agcttcggcaatctgccggatcactacgagcagaaacgcggtaactacaaagtgaaggcc
tggcctgcgctggtggatgagcgcgacagtgtggcgatcaagttgtttgataatccgcag
gaacaacagcaggcgatgtggcgcggtctgcgccgcttgctgctgctgaatatcccgtcg
cctatcaaatatcttcatgaaaaactgccgaacaaagccaaactcggtttgtacttcaac
ccgtacggcaaggtgctggatctgattgacgactgcatctcctgcggcgtggacaagctg
attgacgaagcgggcggaccggtgtggacggaagagggctttgccgcgctgcacgaaaaa
gtgcgtgctgggctgaacgagaccgtggtcactatcgcgaagcaggtcgaacagatcctg
acggcggtgttcaatatcaacaaacgtctgaaagggcgcgtggatatgacgatggcgctg
gcgctgtcggacgtgaaagcgcagatgggtgggctggtgtatcgcggatttgtcaccggc
aacggtttcaaacgtctcggtgatacgctgcgttatctgaatgcgattgaaaaacgtctg
gagaagctggccgtcgatccgcaccgcgatcgcgcgcagatgctgaaagtggagagcgtc
cagcaggcgtggcagcagtggttaaacaaactgccgcccgcgcgtcgtgatgacgaggac
gtgcaggagatccgctggatgatcgaagagctgcgcgtgagtttctttgcgcagcagctg
ggaacgccttatccgatttccgataagcgtatcttgcaggcgatggagcagattacggct
taa
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